Chris Whidden

Meridian Institute — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

10h-index889citations53works1.52yr avg
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Research Topics

Genomics and Phylogenetic Studies(31), Genetic diversity and population structure(10), Evolution and Paleontology Studies(9), Water Quality Monitoring Technologies(6), Genome Rearrangement Algorithms(6)

Publications53 total

Modeling dynamics of adult female lice at salmon farming sites in Eastern Canada: a stochastic, state-based approach
Frontiers in Aquaculture·2025Open Access
Monitoring harmful algae blooms in Darlings Lake, New Brunswick, using K-means clustering of multi-spectral imagery
Frontiers in Remote Sensing·2025Open Access
Detecting Unexpected Marine Species with Underwater Cameras and Deep Learning
2024· 1 cited
Advancing Precision Aquaculture Through Big Data Analytics and Machine Learning in Canadian Fish Farming
2024· 1 cited
A Machine Learning Approach to Modeling Small Vessel Performance
2024
Applying Deep Learning to Predict Adverse Environmental Conditions in Fish Aquaculture Pens
2024
Variable parallelism in the genomic basis of age at maturity across spatial scales in Atlantic Salmon
Ecology and Evolution·2024· 7 citedOpen Access
Ranked Subtree Prune and Regraft
Bulletin of Mathematical Biology·2024· 3 citedOpen Access
Ranked Subtree Prune and Regraft
2023· 1 citedOpen Access
Toward low-cost automated monitoring of life below water with deep learning
Environmental Data Science·2023· 7 citedOpen Access
Parallel genomic basis of age at maturity across spatial scales in Atlantic Salmon
2022· 2 citedOpen Access
Echofilter: A Deep Learning Segmention Model Improves the Automation, Standardization, and Timeliness for Post-Processing Echosounder Data in Tidal Energy Streams
Frontiers in Marine Science·2022· 5 citedOpen Access
Automated Detection, Classification and Counting of Fish in Fish Passages With Deep Learning
Frontiers in Marine Science·2022· 109 citedOpen Access
Applying deep learning to imaging sonar for the automated detection, classification and counting of untagged fish in fish passages
The Journal of the Acoustical Society of America·2021
TBRDist: Calculate Rearrangement Distances Between Unrooted Phylogenetic Trees
Zenodo (CERN European Organization for Nuclear Research)·2020Open Access
19 Dubious Ways to Compute the Marginal Likelihood of a Phylogenetic Tree Topology
Systematic Biology·2019· 7 citedOpen Access
Systematic Exploration of the High Likelihood Set of Phylogenetic Tree Topologies
Systematic Biology·2019Open Access
19 dubious ways to compute the marginal likelihood of a phylogenetic\n tree topology
arXiv (Cornell University)·2018Open Access
Systematic Exploration of the High Likelihood Set of Phylogenetic Tree\n Topologies
arXiv (Cornell University)·2018· 2 citedOpen Access
Calculating the Unrooted Subtree Prune-and-Regraft Distance
IEEE/ACM Transactions on Computational Biology and Bioinformatics·2018· 7 citedOpen Access
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Frequent Co-authors

Norbert Zeh(15), Robert G. Beiko(12), F. A. Matsen(9), Alex Gavryushkin(4), Jason Newport(4), Mathieu Fourment(4), Andrew F. Magee(4), Frederick A. Matsen(4), Luı́s Torgo(3), Steven Kelk(3), Vishnu Kandimalla(2), Matt Richard(2), Frank H. Smith(2), Devi Ayyagari(2), Corey J. Morris(2), Joshua Barnes(2), Tony Kess(2), Sarah J. Lehnert(2), Paul Bentzen(2), Steven Duffy(2)