Emmanuelle Le Chatelier

Université Paris-Saclay — France

Biochemistry, Genetics and Molecular Biology · Life Sciences

36h-index17.7kcitations105works5.22yr avg
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Research Topics

Gut microbiota and health(65), Diet and metabolism studies(28), Clostridium difficile and Clostridium perfringens research(18), Bacterial Genetics and Biotechnology(9), Nutritional Studies and Diet(7)

Publications104 total

NeighborFinder: an R package inferring local microbial network around a species of interest
2025Open Access
Accurate profiling of microbial communities for shotgun metagenomic sequencing with Meteor2
Microbiome·2025· 1 citedOpen Access
Microbiote néonatal et comportement alimentaire chez l’adulte
Cahiers de Nutrition et de Diététique·2025Open Access
A gut microbiome-kidney-heart axis predictive of future cardiovascular diseases.
2025Open Access
Alterations in gut microbiota characteristics along a type 2 diabetes risk gradient linked with family history
Gut Microbes Reports·2025Open Access
Toxic microbiome and progression of chronic kidney disease: insights from a longitudinal CKD-Microbiome Study
Gut·2025· 16 citedOpen Access
Accurate profiling of microbial communities for shotgun metagenomic sequencing with Meteor2
2025· 4 citedOpen Access
CroCoDeEL: accurate control-free detection of cross-sample contamination in metagenomic data
2025· 2 citedOpen Access
OneNet—One network to rule them all: Consensus network inference from microbiome data
PLoS Computational Biology·2024· 4 citedOpen Access
Transient colonizing microbes promote gut dysbiosis and functional impairment
npj Biofilms and Microbiomes·2024· 24 citedOpen Access
THU-053 Longitudinal salivary metagenomics in acute-on-chronic liver failure patients
Journal of Hepatology·2024
Privacy-Preserving Federated Survival Support Vector Machines for Cross-Institutional Time-To-Event Analysis: Algorithm Development and Validation
JMIR AI·2024· 4 citedOpen Access
Perturbation and resilience of the gut microbiome up to 3 months after β-lactams exposure in healthy volunteers suggest an important role of microbial β-lactamases
Microbiome·2024· 13 citedOpen Access
Major depletion of insulin sensitivity-associated taxa in the gut microbiome of persons living with HIV controlled by antiretroviral drugs
Research Square (Research Square)·2023Open Access
Unveiling <i>Candida albicans</i> intestinal carriage in healthy volunteers: the role of micro- and mycobiota, diet, host genetics and immune response
Gut Microbes·2023· 32 citedOpen Access
Evidence of a causal and modifiable relationship between kidney function and circulating trimethylamine N-oxide
Nature Communications·2023· 55 citedOpen Access
Towards a machine learning approach for automated detection of well-to-well contamination in metagenomic data
HAL (Le Centre pour la Communication Scientifique Directe)·2023Open Access
Towards a machine learning approach for automated detection of well-to-well contamination in metagenomics data
HAL (Le Centre pour la Communication Scientifique Directe)·2023Open Access
A microbiota-modulated checkpoint directs immunosuppressive intestinal T cells into cancers
Science·2023· 191 citedOpen Access
#3953 TOXIC MICROBIOME AND CHRONIC KIDNEY DISEASE: INSIGHTS FROM THE CKD-REIN COHORT STUDY
Nephrology Dialysis Transplantation·2023Open Access
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Frequent Co-authors

Nicolas Pons(26), S. Dusko Ehrlich(23), Florence Levenez(16), Benoît Quinquis(13), Edi Prifti(13), Nathalie Galleron(11), Joël Doré(11), Eugeni Belda(10), Jean‐Daniel Zucker(9), Judith Aron‐Wisnewsky(9), Florian Plaza Oñate(9), Karine Clément(8), Trine Nielsen(8), Sofia K. Forslund(8), Torben Hansen(8), Laurent Jannière(8), Sean Kennedy(7), Mathieu Almeida(7), Luís Pedro Coelho(7), Hugo Roume(7)