Olga Vitek

Barnet Hospital — United Kingdom

Chemistry · Physical Sciences

47h-index10.4kcitations152works2.52yr avg
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Research Topics

Advanced Proteomics Techniques and Applications(68), Mass Spectrometry Techniques and Applications(64), Metabolomics and Mass Spectrometry Studies(60), Gene Regulatory Network Analysis(15), Gene expression and cancer classification(12)

Publications152 total

<tt>spatialstein</tt> : An Open-Source Workflow for Annotation, Deconvolution, and Spatially Aware Segmentation of Mass Spectrometry Imaging Data
Analytical Chemistry·2026Open Access
Accounting for longitudinal peak quality metrics with MSstats+ enhances differential analysis in proteomic experiments with data-independent acquisition
2025Open Access
MSstatsTMT Improves Accuracy of Thermal Proteome Profiling
Molecular & Cellular Proteomics·2025· 1 citedOpen Access
Relative quantification of proteins and post-translational modifications in proteomic experiments with shared peptides: a weight-based approach
Bioinformatics·2025· 1 citedOpen Access
<tt>MSIreg</tt>: an R package for unsupervised coregistration of mass spectrometry and H&amp;E images
Bioinformatics·2024· 4 citedOpen Access
<tt>Eliater</tt>: a Python package for estimating outcomes of perturbations in biomolecular networks
Bioinformatics·2024Open Access
Beyond protein lists: AI-assisted interpretation of proteomic investigations in the context of evolving scientific knowledge
Nature Methods·2024· 9 citedOpen Access
An MSstats workflow for detecting differentially abundant proteins in large-scale data-independent acquisition mass spectrometry experiments with FragPipe processing
Nature Protocols·2024· 5 cited
Cardinal v.3: a versatile open-source software for mass spectrometry imaging analysis
Nature Methods·2023· 58 cited
A computational framework for the inference of protein complex remodeling from whole-proteome measurements
Nature Methods·2023· 13 citedOpen Access
Statistical Detection of Differentially Abundant Proteins in Experiments with Repeated Measures Designs and Isobaric Labeling
Journal of Proteome Research·2023· 14 citedOpen Access
Optimal adjustment sets for causal query estimation in partially observed biomolecular networks
Bioinformatics·2023· 4 citedOpen Access
MSstats Version 4.0: Statistical Analyses of Quantitative Mass Spectrometry-Based Proteomic Experiments with Chromatography-Based Quantification at Scale
Journal of Proteome Research·2023· 107 citedOpen Access
Cardinal v3 - a versatile open source software for mass spectrometry imaging analysis
2023· 3 citedOpen Access
A noise-robust deep clustering of biomolecular ions improves interpretability of mass spectrometric images
Bioinformatics·2023· 8 citedOpen Access
Author Correction: Proteome-wide structural changes measured with limited proteolysis-mass spectrometry: an advanced protocol for high-throughput applications
Nature Protocols·2023· 2 citedOpen Access
MSstatsShiny: A GUI for Versatile, Scalable, and Reproducible Statistical Analyses of Quantitative Proteomic Experiments
Journal of Proteome Research·2023· 23 cited
Proteome-wide structural changes measured with limited proteolysis-mass spectrometry: an advanced protocol for high-throughput applications
Nature Protocols·2022· 101 cited
MSstatsPTM: Statistical Relative Quantification of Posttranslational Modifications in Bottom-Up Mass Spectrometry-Based Proteomics
Molecular & Cellular Proteomics·2022· 44 citedOpen Access
Experimental design for causal query estimation in partially observed biomolecular networks
arXiv (Cornell University)·2022Open Access
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Frequent Co-authors

Ruedi Aebersold(14), Meena Choi(11), Lukas Reiter(8), Brendan MacLean(7), Ruth Hüttenhain(6), Ting Huang(6), Ching-Yun Chang(5), Timothy Clough(5), Alexey I. Nesvizhskii(5), Oliver M. Bernhardt(4), Ivan Baxter(4), Lívia S. Eberlin(4), Cheng Zheng(4), Tsung‐Heng Tsai(4), Silvia Šurinová(4), Roland Bruderer(3), Lin‐Yang Cheng(3), Danni Yu(3), David E. Salt(3), Bernd Bodenmiller(3)