Daniel R. Ripoll

Henry M. Jackson Foundation — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

42h-index6.1kcitations118works0.02yr avg
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Research Topics

Protein Structure and Dynamics(51), Enzyme Structure and Function(26), RNA and protein synthesis mechanisms(17), Mass Spectrometry Techniques and Applications(17), Chemical Synthesis and Analysis(10)

Publications117 total

Using the antibody-antigen binding interface to train image-based deep neural networks for antibody-epitope classification
PLoS Computational Biology·2021· 28 citedOpen Access
Role of Hydrophobicity and Solvent-Mediated Charge-Charge Interactions in Stabilizing α -Helices
UNC Libraries·2020Open Access
Molecular Simulations Reveal the Role of Antibody Fine Specificity and Viral Maturation State on Antibody-Dependent Enhancement of Infection in Dengue Virus
Frontiers in Cellular and Infection Microbiology·2019· 18 citedOpen Access
Combinatorial peptide-based epitope mapping from Ebola virus DNA vaccines and infections reveals residue-level determinants of antibody binding
Human Vaccines & Immunotherapeutics·2017· 7 citedOpen Access
Epitope mapping of Ebola virus dominant and subdominant glycoprotein epitopes facilitates construction of an epitope-based DNA vaccine able to focus the antibody response in mice
Human Vaccines & Immunotherapeutics·2017· 16 citedOpen Access
Dengue virus antibody database: Systematically linking serotype-specificity with epitope mapping in dengue virus
PLoS neglected tropical diseases·2017· 25 citedOpen Access
Modeling the Role of Epitope Arrangement on Antibody Binding Stoichiometry in Flaviviruses
Biophysical Journal·2016· 5 citedOpen Access
Structure-based pKa prediction provides a thermodynamic basis for the role of histidines in pH-induced conformational transitions in dengue virus
Biochemistry and Biophysics Reports·2015· 18 citedOpen Access
Tegaserod mimics the neurostimulatory glycan polysialic acid and promotes nervous system repair
Neuropharmacology·2013· 29 citedOpen Access
A Fusion-Inhibiting Peptide against Rift Valley Fever Virus Inhibits Multiple, Diverse Viruses
PLoS neglected tropical diseases·2013· 36 citedOpen Access
Nonyloxytryptamine mimics polysialic acid and modulates neuronal and glial functions in cell culture
Journal of Neurochemistry·2013· 28 citedOpen Access
<i>Tobacco etch virus</i> Infectivity in <i>Capsicum</i> Spp. Is Determined by a Maximum of Three Amino Acids in the Viral Virulence Determinant VPg
Molecular Plant-Microbe Interactions·2012· 31 citedOpen Access
Quantitative Predictions of Binding Free Energy Changes in Drug-Resistant Influenza Neuraminidase
PLoS Computational Biology·2012· 20 citedOpen Access
Free Energy Difference in Indolicidin Attraction to Eukaryotic and Prokaryotic Model Cell Membranes
The Journal of Physical Chemistry B·2012· 20 cited
Novel plant-derived recombinant human interferons with broad spectrum antiviral activity
Antiviral Research·2011· 4 citedOpen Access
Tracing the Origin of the Fungal α1 Domain Places Its Ancestor in the HMG-Box Superfamily: Implication for Fungal Mating-Type Evolution
PLoS ONE·2010· 101 citedOpen Access
Human Inducible Hsp70: Structures, Dynamics, and Interdomain Communication from All-Atom Molecular Dynamics Simulations
Journal of Chemical Theory and Computation·2010· 28 cited
De novo disulfide bridges cause pleiotropic effects on phytase characteristics other than stability
The FASEB Journal·2010
Module evolution and substrate specificity of fungal nonribosomal peptide synthetases involved in siderophore biosynthesis
BMC Evolutionary Biology·2008· 96 citedOpen Access
Role of copper,zinc-superoxide dismutase in catalyzing nitrotyrosine formation in murine liver
Free Radical Biology and Medicine·2008· 42 cited
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Frequent Co-authors

Harold A. Scheraga(21), Adam Liwo(12), Jarosław Pillardy(9), Jorge A. Vila(9), Cezary Czaplewski(7), Jooyoung Lee(6), Carlos H. Faerman(4), Yelena A. Arnautova(4), Israel Silman(3), Joel L. Sussman(3), Stanisław Ołdziej(3), William J. Wedemeyer(3), Kenneth D. Gibson(3), Ryszard J. Wawak(3), Paul H. Axelsen(2), Lisa Giacomelli(2), Klaas J. van Wijk(2), Rajmund Kaźmierkiewicz(2), J. A. Saunders(2), M. Chinchio(2)