Anita C. Schürch

University Medical Center Utrecht — Netherlands

Biochemistry, Genetics and Molecular Biology · Life Sciences

30h-index3.6kcitations80works5.62yr avg
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Research Topics

Antibiotic Resistance in Bacteria(25), Genomics and Phylogenetic Studies(21), Tuberculosis Research and Epidemiology(13), Mycobacterium research and diagnosis(13), Bacteriophages and microbial interactions(11)

Publications80 total

Post-transfer instability, not initial transfer, limits dissemination of IncI1-blaCTX-M-1 plasmids between chicken and human Escherichia coli.
2026Open Access
ALARUM: Active One Health surveillance in LMICs to monitor and predict Antimicrobial Resistance Using Metagenomics – a cross-sectional study protocol
BMJ Open·2026Open Access
Limited value of Nanopore adaptive sampling in a long-read metagenomic profiling workflow of clinical sputum samples
BMC Medical Genomics·2025Open Access
Effect of black soldier fly (Hermetia illucens) larvae oil feed inclusion on growth performance and fecal microbiome development in post-weaning pigs
Livestock Science·2025· 2 citedOpen Access
Limited value of Nanopore adaptive sampling in a long-read metagenomic profiling workflow of clinical sputum samples
2025Open Access
Dissemination of IncQ1 Plasmids Harboring NTEKPC-IId in a Brazilian Hospital
Microorganisms·2025Open Access
gplasCC: classification and reconstruction of plasmids from short-read sequencing data for any bacterial species
2024· 2 citedOpen Access
Pan-pathogen deep sequencing of nosocomial bacterial pathogens in Italy in spring 2020: a prospective cohort study
The Lancet Microbe·2024· 8 citedOpen Access
PlasmidEC and gplas2: an optimized short-read approach to predict and reconstruct antibiotic resistance plasmids in Escherichia coli
Microbial Genomics·2024· 10 citedOpen Access
Metagenomic assembly is the main bottleneck in the identification of mobile genetic elements
PeerJ·2024· 34 citedOpen Access
PlasmidEC and gplas2: An optimised short-read approach to predict and reconstruct antibiotic resistance plasmids in <i>Escherichia coli</i>
2023Open Access
Simulated reads
Zenodo (CERN European Organization for Nuclear Research)·2023Open Access
Simulated reads
Zenodo (CERN European Organization for Nuclear Research)·2023Open Access
Mge-cluster: a reference-free approach for typing bacterial plasmids
NAR Genomics and Bioinformatics·2023· 26 citedOpen Access
Characterization of blaKPC-2 and blaNDM-1 Plasmids of a K. pneumoniae ST11 Outbreak Clone
Antibiotics·2023· 24 citedOpen Access
Consistent typing of plasmids with the mge-cluster pipeline
2022· 2 citedOpen Access
A high-throughput multiplexing and selection strategy to complete bacterial genomes
GigaScience·2021· 24 citedOpen Access
Recovering Escherichia coli Plasmids in the Absence of Long-Read Sequencing Data
Microorganisms·2021· 31 citedOpen Access
Recovering <i>Escherichia coli</i> plasmids in the absence of long-read sequencing data
2021· 5 citedOpen Access
A high-throughput multiplexing and selection strategy to complete bacterial genomes
2021· 2 citedOpen Access
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Frequent Co-authors

Rob J. L. Willems(19), Sergio Arredondo-Alonso(17), Dick van Soolingen(11), Jukka Corander(11), Albert D. M. E. Osterhaus(11), Saskia L. Smits(10), Rogier Bodewes(8), Roland J. Siezen(7), Janetta Top(7), Bart L. Haagmans(7), Kristin Kremer(6), Malbert R. C. Rogers(5), Tess D. Verschuuren(5), Claudia M. E. Schapendonk(5), Marc J. M. Bonten(5), Martin J. Boeree(5), Willem van Schaik(4), Maiju Pesonen(4), Anna K. Pöntinen(4), Rebecca A. Gladstone(4)