Aaron L. Halpern

Illumina (United States) — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

48h-index42.4kcitations83works0.82yr avg
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Research Topics

Genomics and Phylogenetic Studies(49), RNA and protein synthesis mechanisms(16), Microbial Community Ecology and Physiology(14), Chromosomal and Genetic Variations(13), Gene expression and cancer classification(8)

Publications83 total

Illumina complete long read assay yields contiguous bacterial genomes from human gut metagenomes
mSystems·2025· 3 citedOpen Access
P698: Accurate genotyping of high homology HBA and SMN genes from whole exome sequencing
Genetics in Medicine Open·2025Open Access
Atypical free sialic acid storage disorder associated with tissue specific mosaicism of SLC17A5
Molecular Genetics and Metabolism·2024Open Access
Illumina Complete Long Read Assay yields contiguous bacterial genomes from human gut metagenomes
2024· 1 citedOpen Access
Quantitative measurement of covariation on evolutionary tree with application to contact prediction.
OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)·2024Open Access
Life as a Guide to Its Own Origins
Annual Review of Ecology Evolution and Systematics·2023· 33 citedOpen Access
What it takes to solve the Origin(s) of Life: An integrated review of techniques
arXiv (Cornell University)·2023· 6 citedOpen Access
Biophysical Interactions Underpin the Emergence of Information in the Genetic Code
Life·2023· 10 citedOpen Access
Biophysical Interactions Underpin the Emergence of Information in the Genetic Code
Preprints.org·2023· 2 citedOpen Access
The emergence of heredity in autotrophic protocells
Biochimica et Biophysica Acta (BBA) - Bioenergetics·2022
CYP2C8, CYP2C9, and CYP2C19 Characterization Using Next-Generation Sequencing and Haplotype Analysis
Journal of Molecular Diagnostics·2022· 44 citedOpen Access
Spinal muscular atrophy diagnosis and carrier screening from genome sequencing data
Genetics in Medicine·2020· 135 citedOpen Access
Spinal muscular atrophy diagnosis and carrier screening from genome sequencing data
2019· 10 citedOpen Access
Strelka2: fast and accurate calling of germline and somatic variants
Nature Methods·2018· 1.7k cited
Supporting Data for "Strelka2: Fast and accurate variant calling for germline and somatic sequencing applications"
Figshare·2018Open Access
Strelka2: Fast and accurate variant calling for clinical sequencing applications
2017· 39 citedOpen Access
Clitics
2017· 30 cited
Haplotype phasing of whole human genomes using bead-based barcode partitioning in a single tube
Nature Biotechnology·2017· 61 cited
A reference data set of 5.4 million phased human variants validated by genetic inheritance from sequencing a three-generation 17-member pedigree
Genome Research·2016· 411 citedOpen Access
A reference dataset of 5.4 million phased human variants validated by genetic inheritance from sequencing a three-generation 17-member pedigree
2016· 31 citedOpen Access
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Frequent Co-authors

J. Craig Venter(18), Karin Remington(13), Granger G. Sutton(10), Douglas B. Rusch(10), Saul Kravitz(8), Eugene W. Myers(7), Shibu Yooseph(7), Robert L. Strausberg(7), Ian Dew(6), Samuel Lévy(6), Clark Mobarry(6), Zhongwu Lai(6), Deborah Nusskern(6), M.E. Frazier(6), Brian P. Walenz(6), Mark D. Adams(5), Randall Bolanos(5), Arthur L. Delcher(5), Michael J. Flanigan(5), Knut Reinert(5)