Saswata Karmakar

Biochemistry, Genetics and Molecular Biology · Life Sciences

15h-index517citations27works0.02yr avg
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Research Topics

Advanced biosensing and bioanalysis techniques(20), DNA and Nucleic Acid Chemistry(17), RNA Interference and Gene Delivery(11), RNA and protein synthesis mechanisms(5), CRISPR and Genetic Engineering(4)

Publications27 total

MolQuery: Prediction of Lipid Synthesizability Using Active Learning
ACS Omega·2026Open Access
Inhalable dry powder product (DPP) of mRNA lipid nanoparticles (LNPs) for pulmonary delivery
Drug Delivery and Translational Research·2023· 44 citedOpen Access
Understanding structure activity relationships of Good HEPES lipids for lipid nanoparticle mRNA vaccine applications
Biomaterials·2023· 24 cited
Factors Impacting Invader-Mediated Recognition of Double-Stranded DNA
Molecules·2022· 4 citedOpen Access
Serine-γPNA, Invader probes, and chimeras thereof: three probe chemistries that enable sequence-unrestricted recognition of double-stranded DNA
Organic & Biomolecular Chemistry·2022· 6 citedOpen Access
Nicked Invader probes: multistranded and sequence-unrestricted recognition of double-stranded DNA
Organic & Biomolecular Chemistry·2021· 3 citedOpen Access
Recognition of double-stranded DNA using LNA-modified toehold Invader probes
Organic & Biomolecular Chemistry·2021· 9 citedOpen Access
Impact of non-nucleotidic bulges on recognition of mixed-sequence dsDNA by pyrene-functionalized Invader probes
Organic & Biomolecular Chemistry·2020· 1 citedOpen Access
Head-to-head comparison of LNA, <sup>MP</sup>γPNA, INA and Invader probes targeting mixed-sequence double-stranded DNA
Organic & Biomolecular Chemistry·2019· 17 cited
Recognition of mixed-sequence DNA targets using spermine-modified Invader probes
Organic & Biomolecular Chemistry·2019· 2 cited
Synthesis and biophysical characterization of oligonucleotides modified with O2′-alkylated RNA monomers featuring substituted pyrene moieties
Organic & Biomolecular Chemistry·2018· 4 cited
25 years and still going strong: 2′-<i>O</i>-(pyren-1-yl)methylribonucleotides – versatile building blocks for applications in molecular biology, diagnostics and materials science
Organic & Biomolecular Chemistry·2017· 9 cited
Recognition of mixed-sequence DNA using double-stranded probes with interstrand zipper arrangements of O2′-triphenylene- and coronene-functionalized RNA monomers
Organic & Biomolecular Chemistry·2017· 6 citedOpen Access
Erratum: Corrigendum: Organocatalytic removal of formaldehyde adducts from RNA and DNA bases
Nature Chemistry·2015· 1 citedOpen Access
Organocatalytic removal of formaldehyde adducts from RNA and DNA bases
Nature Chemistry·2015· 50 citedOpen Access
Mixed-Sequence Recognition of Double-Stranded DNA Using Enzymatically Stable Phosphorothioate Invader Probes
Molecules·2015· 7 citedOpen Access
Bulged Invader probes: activated duplexes for mixed-sequence dsDNA recognition with improved thermodynamic and kinetic profiles
Chemical Communications·2015· 18 cited
Invader probes: harnessing the energy of intercalation to facilitate recognition of chromosomal DNA for diagnostic applications
Chemical Science·2015· 29 citedOpen Access
New Organocatalyst Scaffolds with High Activity in Promoting Hydrazone and Oxime Formation at Neutral pH
Organic Letters·2014· 100 citedOpen Access
Self-Assembled Monolayers of Thiols Adsorbed on Au/ZnO-Functionalized Silica Nanosprings: Photoelectron Spectroscopy-Analysis and Detection of Vaporized Explosives
ACS Applied Materials & Interfaces·2014· 17 cited
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Frequent Co-authors

Patrick J. Hrdlicka(21), Dale C. Guenther(12), Raymond G. Emehiser(6), Eric T. Kool(3), Brooke A. Anderson(3), Bradley C. Gibbons(3), Shiva P. Adhikari(3), Emily M. Harcourt(2), David S. Hewings(2), Florian Scherer(2), Alexander F. Lovejoy(2), David M. Kurtz(2), Thomas Ehrenschwender(2), Luzi Jakob Barandun(2), Caroline Roost(2), Ash A. Alizadeh(2), Shrirang Karve(2), Frank DeRosa(2), Rie L. Rathje(2), Sanne Andersen(2)