James Cuff

Boston University — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

16h-index27.7kcitations21works0.02yr avg
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Research Topics

Genomics and Phylogenetic Studies(9), RNA and protein synthesis mechanisms(6), Genomics and Chromatin Dynamics(4), Enzyme Structure and Function(4), Scientific Computing and Data Management(4)

Publications20 total

Welcome to the first issue of <scp><i>Applied AI Letters</i></scp>
Applied AI Letters·2020· 3 citedOpen Access
The medical science DMZ: A network design pattern for data-intensive medical science
2018
The medical science DMZ: a network design pattern for data-intensive medical science
Journal of the American Medical Informatics Association·2017· 16 citedOpen Access
A High-Availability Cloud for Research Computing
Computer·2017· 10 cited
The Medical Science DMZ
Journal of the American Medical Informatics Association·2016· 12 citedOpen Access
The 500 builds of 300 applications in the HeLmod repository will at least get you started on a full suite of scientific applications
Faculty of 1000 Research Ltd·2015Open Access
A high-resolution map of human evolutionary constraint using 29 mammals
Nature·2011· 1.2k citedOpen Access
Distinguishing protein-coding and noncoding genes in the human genome
Proceedings of the National Academy of Sciences·2007· 630 citedOpen Access
Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome
Genome Research·2007· 219 citedOpen Access
Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences
Nature·2007· 720 citedOpen Access
A Bivalent Chromatin Structure Marks Key Developmental Genes in Embryonic Stem Cells
Cell·2006· 5.4k citedOpen Access
Genome sequence, comparative analysis and haplotype structure of the domestic dog
Nature·2005· 2.6k citedOpen Access
The Ensembl Computing Architecture
Genome Research·2004· 27 citedOpen Access
An Overview of Ensembl
Genome Research·2004· 471 citedOpen Access
The Jalview Java alignment editor
Bioinformatics·2004· 1.7k citedOpen Access
Initial sequencing and comparative analysis of the mouse genome
Nature·2002· 7.2k citedOpen Access
ProtEST: protein multiple sequence alignments from expressed sequence tags
Bioinformatics·2000· 19 citedOpen Access
Application of multiple sequence alignment profiles to improve protein secondary structure prediction
Proteins Structure Function and Bioinformatics·2000· 789 cited
Evaluation and improvement of multiple sequence methods for protein secondary structure prediction
Proteins Structure Function and Bioinformatics·1999· 688 cited
JPred: a consensus secondary structure prediction server.
Bioinformatics·1998· 1.0k citedOpen Access

Frequent Co-authors

Michèle Clamp(10), Kerstin Lindblad‐Toh(6), Ewan Birney(5), Geoffrey J. Barton(5), Sante Gnerre(4), David B. Jaffe(4), Michael Kamal(4), Jean L. Chang(4), Tim Cutts(3), Richard A. Gibbs(3), Nick Goldman(3), Leo Goodstadt(3), Eric D. Green(3), David Haussler(3), Tarjei S. Mikkelsen(3), Xiaohui Xie(3), Eric S. Lander(3), Michael C. Zody(3), Evan Mauceli(3), Stephen M. J. Searle(3)