Adam Jurčík

Masaryk University — Czech Republic

Biochemistry, Genetics and Molecular Biology · Life Sciences

7h-index482citations16works0.02yr avg
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Research Topics

Protein Structure and Dynamics(9), Data Visualization and Analytics(6), Mass Spectrometry Techniques and Applications(4), Advanced Proteomics Techniques and Applications(3), Semantic Web and Ontologies(2)

Publications16 total

Visual Analysis of Protein–Protein Interaction Docking Models Using COZOID Tool
Methods in molecular biology·2019· 6 cited
Visual Analysis of Ligand Trajectories in Molecular Dynamics
2019· 6 cited
Multiscale Visual Drilldown for the Analysis of Large Ensembles of Multi-Body Protein Complexes
IEEE Transactions on Visualization and Computer Graphics·2019· 6 citedOpen Access
Screening of the Binding Trajectories of Inhibitors via Tunnels using Novel Software CaverDock
Proceedings of MOL2NET 2018, International Conference on Multidisciplinary Sciences, 4th edition·2018Open Access
Sampling-Based Motion Planning for Tracking Evolution of Dynamic Tunnels in Molecular Dynamics Simulations
Journal of Intelligent & Robotic Systems·2018· 10 cited
CAVER Analyst 2.0: analysis and visualization of channels and tunnels in protein structures and molecular dynamics trajectories
Bioinformatics·2018· 377 citedOpen Access
Interactive exploration of ligand transportation through protein tunnels
BMC Bioinformatics·2017· 15 citedOpen Access
Watergate: Visual Exploration of Water Trajectories in Protein Dynamics
Eurographics·2017· 9 citedOpen Access
Accelerated visualization of transparent molecular surfaces in molecular dynamics
2016· 12 cited
MoleCollar and Tunnel Heat Map Visualizations for Conveying Spatio‐Temporo‐Chemical Properties Across and Along Protein Voids
Computer Graphics Forum·2015· 25 cited
Visibility-based approach to surface detection of tunnels in proteins
2015· 7 cited
Geometry-based Methods for Detection of Asymmetric Tunnels in Proteins
2014
Visualizing Movements of Protein Tunnels in Molecular Dynamics Simulations
Eurographics·2014· 2 citedOpen Access
Geometry-based Algorithm for Detection of Asymmetric Tunnels in Protein Molecules
Eurographics·2013· 3 citedOpen Access
Knoocks - Ontology Visualization Plug-in for Protege
2012· 2 cited
Development of Visualization Plug-in for Protégé
2011· 2 cited

Frequent Co-authors

Barbora Kozlíková(12), Jan Byška(10), Katarína Furmanová(6), Jiří­ Sochor(5), Helwig Hauser(4), Jiřı́ Damborský(3), David Bednář(2), Sérgio M. Marques(2), Piia Kokkonen(2), Ondřej Strnad(2), Ivan Viola(2), Július Parulek(2), Vojtěch Vonásek(2), Ondřej Vávra(2), Lukáš Daniel(1), Jan Brezovský(1), Jan Štourač(1), Antonín Pavelka(1), Martin Maňák(1), M. Eduard Gröller(1)