Yongqun He

University of Michigan–Ann Arbor — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

54h-index11.3kcitations343works3.22yr avg
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Research Topics

Biomedical Text Mining and Ontologies(142), vaccines and immunoinformatics approaches(82), Bioinformatics and Genomic Networks(76), Semantic Web and Ontologies(47), Computational Drug Discovery Methods(40)

Publications340 total

SEA-CDM Supplemental Figures
Zenodo (CERN European Organization for Nuclear Research)·2025Open Access
SEA-CDM Supplemental Figures
Zenodo (CERN European Organization for Nuclear Research)·2025Open Access
Systematic annotation and analysis of susceptibility genes associated with vaccine adverse events
BMC Medical Genomics·2025Open Access
Logic-based Yin-Yang ontology and top-level design for integrating traditional Chinese and Western medicine
ACTA AGRICULTURAE UNIVERSITATIS JIANGXIENSIS·2025Open Access
Cellular and Spatial Drivers of Unresolved Injury and Functional Decline in the Human Kidney
2025· 1 citedOpen Access
AcuKG: a comprehensive knowledge graph for medical acupuncture
Journal of the American Medical Informatics Association·2025· 1 citedOpen Access
Utilizing BERTopic Modeling for Concept Discovery in the Domain of Gerotranscendence and Solitude
2025Open Access
SEA CDM: Study-Experiment-Assay Common Data Model and Databases for Cross-Domain Data Integration and Analysis
2025Open Access
VO: The Vaccine Ontology
2025Open Access
Exploring Blockchain Technology to Improve Vaccine Access in Low-Resource Countries
Studies in health technology and informatics·2025Open Access
The Association of Long COVID and CKD
Clinical Journal of the American Society of Nephrology·2025Open Access
Immune Biomarkers, Profiles, and Responses: A Vaccine Ontology Perspective
2025· 1 citedOpen Access
Mapping and Harmonization of CVX vaccine terms to the Vaccine Ontology
2025· 1 citedOpen Access
VaxKG: Integrating The Vaccine Ontology And VIOLIN For Advanced Vaccine Queries And LLM-Powered Chat Systems
2025· 1 citedOpen Access
Evaluating the safety of XBB.1.5-containing COVID-19 mRNA vaccines using a self-controlled case series study
Nature Communications·2025· 4 citedOpen Access
A fourfold pathogen reference ontology suite
Journal of Biomedical Semantics·2025Open Access
Vaccine Effectiveness Among 5- to 17-year-old Individuals with Prior SARS-CoV-2 Infection: An EHR-Based Target Trial Emulation Study from the RECOVER Project
2025· 1 citedOpen Access
Unveiling differential adverse event profiles in vaccines via LLM text embeddings and ontology semantic analysis
Journal of Biomedical Semantics·2025· 2 citedOpen Access
Anti-anaerobic Antibiotics, Gut Microbiota, and Sepsis-associated Acute Kidney Injury
American Journal of Respiratory and Critical Care Medicine·2025
OntoTiger: a platform of ontology-based application tools for integrative biomedical exploration
Nucleic Acids Research·2025Open Access
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Frequent Co-authors

Zuoshuang Xiang(18), Edison Ong(10), Chris Mungall(8), Alan Ruttenberg(8), Melissa Haendel(6), Mélanie Courtot(6), Yu Lin(5), Barry Smith(5), Jie Zheng(5), Laura Barisoni(5), Sanjay Jain(5), Ravi Iyengar(5), Gerhardt G. Schurig(5), Mei U Wong(4), Anthony Huffman(4), Ryan R. Brinkman(4), Helen Parkinson(4), Bjoern Peters(4), Christian J. Stoeckert(4), Alexander D. Diehl(4)