Mehmet Koyutürk

University Hospitals of Cleveland — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

37h-index4.6kcitations190works6.42yr avg
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Research Topics

Bioinformatics and Genomic Networks(91), Gene expression and cancer classification(35), Computational Drug Discovery Methods(21), Gene Regulatory Network Analysis(17), Advanced Proteomics Techniques and Applications(16)

Publications190 total

Redox Stoichiometry at the Single-Residue Level Using Mass Spectrometry Reveals Dynamic Methionine Sulfoxide Speciation in Actin and Calmodulin during Brain Aging
Journal of Proteome Research·2025
Rethinking the Estrogen Receptor Beta Dominance Hypothesis in Endometriosis: Insights from Single Cell RNA Sequencing Meta-analysis
2025Open Access
Protein Biomarkers in Monocytes and CD4+ Lymphocytes for Predicting Lithium Treatment Response of Bipolar Disorder: a Feasibility Study with Tyramine-Based Signal- Amplified Flow Cytometry
Psychopharmacology Bulletin·2025· 16 citedOpen Access
ArnoldiGCL: Graph Contrastive Learning via Learnable Arnoldi-Based Guided Spectral Chebyshev Polynomial Filters
2025Open Access
Guest Editorial for Special Section on ACM BCB 2023
IEEE Transactions on Computational Biology and Bioinformatics·2025
Bias-aware training and evaluation of link prediction algorithms in network biology
Proceedings of the National Academy of Sciences·2025· 3 citedOpen Access
Expanding Label Sets for Graph Convolutional Networks
Studies in computational intelligence·2025
Bayesian Network Enhancement for Robust Graph Machine Learning
Studies in computational intelligence·2025
Generalized Learning of Coefficients in Spectral Graph Convolutional Networks
2024· 4 cited
Considerations in the search for epistasis
Genome biology·2024· 14 citedOpen Access
Topological-Similarity Based Canonical Representations for Biological Link Prediction
IEEE Transactions on Computational Biology and Bioinformatics·2024· 3 citedOpen Access
Exploring temporal and sex-linked dysregulation in Alzheimer disease phosphoproteome
iScience·2024· 2 citedOpen Access
Generalized Learning of Coefficients in Spectral Graph Convolutional Networks
arXiv (Cornell University)·2024Open Access
Random walks with variable restarts for negative-example-informed label propagation
Data Mining and Knowledge Discovery·2024Open Access
Methionine Sulfoxide Speciation in Mouse Hippocampus Revealed by Global Proteomics Exhibits Age- and Alzheimer’s Disease-Dependent Changes Targeted to Mitochondrial and Glycolytic Pathways
International Journal of Molecular Sciences·2024· 1 citedOpen Access
Methionine Sulfoxide Speciation in Mouse Hippocampus Revealed by Global Proteomics Exhibits Age and Alzheimer’s Disease Dependent Changes Targeted to Mitochondrial and Glycolytic Pathways
Preprints.org·2024· 1 citedOpen Access
Possible Role of Correlation Coefficients and Network Analysis of Multiple Intracellular Proteins in Blood Cells of Patients with Bipolar Disorder in Studying the Mechanism of Lithium Responsiveness: A Proof-Concept Study
Journal of Clinical Medicine·2024· 5 citedOpen Access
Making proteomics accessible: RokaiXplorer for interactive analysis of phospho-proteomic data
Faculty of 1000 Research Ltd·2024Open Access
Generalized Gromov Wasserstein Distance for Seed-Informed Network Alignment
Studies in computational intelligence·2024· 1 cited
Making proteomics accessible: <scp>Rokai</scp> <scp>Xplorer</scp> for interactive analysis of phospho-proteomic data
Bioinformatics Advances·2024· 3 citedOpen Access
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Frequent Co-authors

Mark R. Chance(14), Ananth Grama(13), Wojciech Szpankowski(5), Gürkan Bebek(5), Salim A. Chowdhury(5), Thomas LaFramboise(4), Rod K. Nibbe(4), Zachary Stanfield(4), Mustafa Coşkun(4), Shankar Subramaniam(3), Matthew Ruffalo(3), Sinan Erten(3), Ahmad Maroof Karimi(3), Roger H. French(3), Günnur Karakurt(3), Yu Liu(3), Sean Maxwell(3), Danica Wiredja(2), Rob M. Ewing(2), Bogdan Cărbunar(2)