Charles Y. Chiu

University of California, San Francisco — United States

Medicine · Health Sciences

84h-index30.8kcitations423works7.02yr avg
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Research Topics

SARS-CoV-2 and COVID-19 Research(68), SARS-CoV-2 detection and testing(56), Mosquito-borne diseases and control(43), Viral Infections and Vectors(43), Viral gastroenteritis research and epidemiology(40)

Publications421 total

Next-Generation Sequencing Reveals Continued Circulation of Rare HIV-1 Subtypes in the Democratic Republic of the Congo and Refines the Estimate of the Emergence Dates of Three Subtypes
Viruses·2026Open Access
Implementation and outcomes of a rapid response genomic hospital epidemiology programme at an academic medical centre over 7 years
The Lancet Microbe·2026Open Access
Robust mission-driven responses to infectious disease threats delivered by the Abbott pandemic defense coalition
International Journal of Infectious Diseases·2025· 1 citedOpen Access
RNA Host Response-Based Diagnosis of Tick-Borne Infections using Machine Learning and Generative Artificial Intelligence
2025Open Access
<i>Trichosporon inkin</i> meningitis in a pediatric patient diagnosed via metagenomic sequencing
ASM Case Reports·2025· 1 citedOpen Access
International Multicenter Study of the Outcomes of Infection with Neglected Respiratory Viruses in Solid Organ Transplant Recipients
American Journal of Transplantation·2025
Fungal Meningitis in US Patients Who Received Epidural Anesthesia in Matamoros, Mexico
Clinical Infectious Diseases·2025· 2 cited
Differential severity of SARS-CoV-2 variant infections in children and adults with COVID-19
Journal of Clinical Virology·2025
Differential immunity induced by Omicron sublineages in naïve and vaccine breakthrough infections
Scientific Reports·2025· 2 citedOpen Access
Chagas Meningoencephalitis Diagnosed in Heart Transplant Patient Using Metagenomic Next-Generation Sequencing of Cerebrospinal Fluid
American Journal of Tropical Medicine and Hygiene·2025
Metagenomic Identification of <i>Fusarium solani</i> Strain as Cause of US Fungal Meningitis Outbreak Associated with Surgical Procedures in Mexico, 2023
Emerging infectious diseases·2025· 4 citedOpen Access
The Regulatory Landscape for Clinical Metagenomic Testing
JAMA Neurology·2025· 3 cited
Clinical translation of microbiome research
Nature Medicine·2025· 40 cited
Proposed research classification criteria for Lyme disease in infection associated chronic illness studies
Frontiers in Medicine·2025· 4 citedOpen Access
High-throughput multiplexed serology via the mass-spectrometric analysis of isotopically barcoded beads
Nature Biomedical Engineering·2025· 5 citedOpen Access
299. Metagenomic Next-Generation Sequencing of Cerebrospinal Fluid for Central Nervous System Infections: Clinical Factors Associated with Increased Diagnostic Yield
Open Forum Infectious Diseases·2025· 1 citedOpen Access
298. Host Response Profiling from Clinical Metagenomic Sequencing Data for Diagnosis of Central Nervous System Infections
Open Forum Infectious Diseases·2025· 2 citedOpen Access
Two Human Cases of Fatal Meningoencephalitis Associated with Potosi and Lone Star Virus Infections, United States, 2020–2023
Emerging infectious diseases·2025· 6 citedOpen Access
Severe Non–Donor-Derived Lymphocytic Choriomeningitis Virus Infection in 2 Solid Organ Transplant Recipients
Open Forum Infectious Diseases·2025· 6 citedOpen Access
Differential Severity of Sars-Cov-2 Variant Infections in Children and Adults with Covid-19
SSRN Electronic Journal·2025Open Access
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Frequent Co-authors

Steve Miller(19), Scot Federman(16), Guixia Yu(13), Alexander L. Greninger(11), Samia N. Naccache(10), Joseph L. DeRisi(10), Wei Gu(9), Debra A. Wadford(9), Xianding Deng(8), Venice Servellita(8), Alicia Sotomayor-González(7), Kelsey C. Zorn(7), Michael R. Wilson(7), Sneha Somasekar(6), Doug Stryke(6), Shigeo Yagi(6), Elaine Hsu(5), Erik Samayoa(5), Kevin Messacar(5), Candace Wang(5)