Scot Federman

Center for Food Safety and Applied Nutrition — United States

Environmental Science · Physical Sciences

35h-index9.9kcitations84works5.22yr avg
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Research Topics

Bacteriophages and microbial interactions(12), SARS-CoV-2 and COVID-19 Research(11), Genomics and Phylogenetic Studies(10), Cancer Genomics and Diagnostics(9), Viral gastroenteritis research and epidemiology(8)

Publications84 total

Simultaneous capture of single cell RNA-seq, ATAC-seq, and CRISPR perturbation enables multiomic screens to identify gene regulatory relationships
Cell Reports Methods·2025· 3 citedOpen Access
An Overview of Farm Investigation Findings Associated with Outbreaks of Shiga Toxin-Producing Escherichia coli Infections Linked to Leafy Greens: 2009–2021
Journal of Food Protection·2025· 3 citedOpen Access
SAMHD1 knockout hiPSC model enables high lentiviral transduction efficiency in myeloid cell types
Frontiers in Genetics·2025Open Access
Simultaneous single-cell CRISPR, RNA, and ATAC-seq enables multiomic CRISPR screens to identify gene regulatory relationships
2025Open Access
<i>SAMHD1</i> Knockout iPSC model enables high lenti-viral transduction in myeloid cell types
2025Open Access
Comparison of Plasma Metagenomic Next-generation Sequencing and PCR Methods for Epstein–Barr Virus Viral Load Monitoring in Nasopharyngeal Carcinoma
Anticancer Research·2024· 2 citedOpen Access
Variants in tubule epithelial regulatory elements mediate most heritable differences in human kidney function
Nature Genetics·2024· 19 citedOpen Access
Variants in tubule epithelial regulatory elements mediate most heritable differences in human kidney function
2024· 4 citedOpen Access
Compact CRISPR genetic screens enabled by improved guide RNA library cloning
Genome biology·2024· 16 citedOpen Access
Identification of Genes and Regulatory Elements Affecting Human Kidney Function
Journal of the American Society of Nephrology·2023
Metagenomic Detection of Divergent Insect- and Bat-Associated Viruses in Plasma from Two African Individuals Enrolled in Blood-Borne Surveillance
Viruses·2023· 24 citedOpen Access
Longitudinal comparison of the developing gut virome in infants and their mothers
Cell Host & Microbe·2023· 52 citedOpen Access
Purifying selection decreases the potential for Bangui orthobunyavirus outbreaks in humans
Virus Evolution·2023· 9 citedOpen Access
Optimized CRISPR guide RNA library cloning reduces skew and enables more compact genetic screens
2022· 4 citedOpen Access
Longitudinal comparison of the developing gut virome in infants and their mothers
2022Open Access
Detection of Neoplasms by Metagenomic Next-Generation Sequencing of Cerebrospinal Fluid (S27.004)
Neurology·2022
ICE volume 42 issue 10 Cover and Front matter
Infection Control and Hospital Epidemiology·2021Open Access
Detection of Neoplasms by Metagenomic Next-Generation Sequencing of Cerebrospinal Fluid
JAMA Neurology·2021· 36 citedOpen Access
Detection of cryptogenic malignancies from metagenomic whole genome sequencing of body fluids
Genome Medicine·2021· 39 citedOpen Access
Detection of Neoplasms by Metagenomic Sequencing of Cerebrospinal Fluid
2021Open Access
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Frequent Co-authors

Charles Y. Chiu(40), Steve Miller(18), Guixia Yu(17), Samia N. Naccache(15), Xianding Deng(12), Doug Stryke(11), Alexander L. Greninger(10), Sneha Somasekar(9), Jérôme Bouquet(9), Debra A. Wadford(9), Joseph L. DeRisi(8), Shaun Arevalo(8), Wei Gu(8), Venice Servellita(7), Alicia Sotomayor-González(7), Erik Samayoa(6), Kevin Messacar(6), Allan Gopez(6), Candace Wang(6), Elaine Hsu(6)