Aaron E. Darling

University of Technology Sydney — Australia

Biochemistry, Genetics and Molecular Biology · Life Sciences

51h-index50.8kcitations235works2.72yr avg
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Research Topics

Genomics and Phylogenetic Studies(138), Microbial Community Ecology and Physiology(44), Gut microbiota and health(38), Chromosomal and Genetic Variations(24), Bacteriophages and microbial interactions(18)

Publications235 total

Illumina complete long read assay yields contiguous bacterial genomes from human gut metagenomes
mSystems·2025· 3 citedOpen Access
Illumina Complete Long Read Assay yields contiguous bacterial genomes from human gut metagenomes
2024· 1 citedOpen Access
Xanthomonas rydalmerensis sp. nov., a non-pathogenic member of Group 1 Xanthomonas
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY·2024· 4 citedOpen Access
<i>Xanthomonas rydalmerenesis</i> sp. nov., a novel plant bacteria isolated from <i>Fragaria x ananassa</i>
2023Open Access
Expanding the range of the respiratory infectome in Australian feedlot cattle with and without respiratory disease using metatranscriptomics
Microbiome·2023· 26 citedOpen Access
Evaluation of recombination detection methods for viral sequencing
Virus Evolution·2023· 7 citedOpen Access
Fidelity of hyperbolic space for Bayesian phylogenetic inference
PLoS Computational Biology·2023· 8 citedOpen Access
Rhometa: Population recombination rate estimation from metagenomic read datasets
PLoS Genetics·2023· 2 citedOpen Access
Rhometa: Population recombination rate estimation from metagenomic read datasets
Zenodo (CERN European Organization for Nuclear Research)·2023Open Access
Rhometa: Population recombination rate estimation from metagenomic read datasets
2023Open Access
Rhometa: Population recombination rate estimation from metagenomic read datasets
2022· 3 citedOpen Access
Phylogenetic diversity analysis of shotgun metagenomic reads describes gut microbiome development and treatment effects in the post-weaned pig
PLoS ONE·2022· 10 citedOpen Access
Fidelity of Hyperbolic Space for Bayesian Phylogenetic Inference
arXiv (Cornell University)·2022Open Access
Critical Assessment of Metagenome Interpretation: the second round of challenges
Nature Methods·2022· 368 citedOpen Access
Hackflex: low-cost, high-throughput, Illumina Nextera Flex library construction
Microbial Genomics·2022· 87 citedOpen Access
qc3C: Reference-free quality control for Hi-C sequencing data
PLoS Computational Biology·2021· 12 citedOpen Access
Post-weaning shifts in microbiome composition and metabolism revealed by over 25 000 pig gut metagenome-assembled genomes
Microbial Genomics·2021· 20 citedOpen Access
STRONG: metagenomics strain resolution on assembly graphs
Genome biology·2021· 113 citedOpen Access
Strainberry: automated strain separation in low-complexity metagenomes using long reads
Nature Communications·2021· 63 citedOpen Access
Critical Assessment of Metagenome Interpretation - the second round of challenges
2021· 45 citedOpen Access
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Frequent Co-authors

Jonathan A. Eisen(10), Nicole T. Perna(6), Rayan Chikhi(6), Bob Mau(5), Alexander Sczyrba(5), Adrian Fritz(5), Christopher Quince(5), David Koslicki(4), Alexey Gurevich(4), Matthew Z. DeMaere(4), Fernando Meyer(4), Alice C. McHardy(4), Xavier Didelot(4), Daniel L. Ayres(3), Marc A. Suchard(3), John P. Huelsenbeck(3), Nikos C. Kyrpides(3), Edward M. Rubin(3), Tanja Woyke(3), Guillaume Jospin(3)