John P. Huelsenbeck

University of California, Berkeley — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

75h-index113.5kcitations140works0.02yr avg
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Research Topics

Genomics and Phylogenetic Studies(82), Genetic diversity and population structure(70), Evolution and Paleontology Studies(55), Evolution and Genetic Dynamics(20), Bayesian Methods and Mixture Models(18)

Publications140 total

Inferring Branch-Specific Rates of Lineage Diversification Under the Birth–Death-Shift Process
Systematic Biology·2026Open Access
Simulated Phylogenies for: Inferring branch-specific rates of lineage diversification under the birth-death-shift process
Zenodo (CERN European Organization for Nuclear Research)·2026Open Access
Simulated Phylogenies for: Inferring branch-specific rates of lineage diversification under the birth-death-shift process
Zenodo (CERN European Organization for Nuclear Research)·2026Open Access
Simulated Phylogenies for: Inferring branch-specific rates of lineage diversification under the birth-death-shift process
DRYAD·2025Open Access
Principal Components Analysis fails to recover phylogenetic structure in hominins
2025Open Access
Parallel power posterior analyses for fast computation of marginal likelihoods in phylogenetics
PeerJ·2021· 19 citedOpen Access
A COMPARATIVE ANALYSIS OF DE NOVO TRANSCRIPTOME ASSEMBLY TO UNDERSTAND THE ABIOTIC STRESS ADAPTATION OF DESERT PLANTS IN SAUDI ARABIA
Applied Ecology and Environmental Research·2021· 8 citedOpen Access
Assessing Uncertainty in the Rooting of the SARS-CoV-2 Phylogeny
Molecular Biology and Evolution·2020· 62 citedOpen Access
Biodiversity in Bacterial Phyla Composite in Arid Soils of the Community of Desert Medicinal Plant Rhazya stricta
Journal of Pharmaceutical Research International·2020· 7 citedOpen Access
Assessment of fungal diversity in soil rhizosphere associated with Rhazya stricta and some desert plants using metagenomics
Archives of Microbiology·2020· 6 cited
Phylogeny of extant crinoids: A reappraisal at the ordinal level
2020
Assessing uncertainty in the rooting of the SARS-CoV-2 phylogeny
2020· 15 citedOpen Access
Using Parsimony-Guided Tree Proposals to Accelerate Convergence in Bayesian Phylogenetic Inference
Systematic Biology·2020· 31 citedOpen Access
DIVERSITY PROFILING OF ASSOCIATED BACTERIA FROM THE SOILS OF STRESS TOLERANT PLANTS FROM SEACOAST OF JEDDAH, SAUDI ARABIA
Applied Ecology and Environmental Research·2020· 7 citedOpen Access
Using Parsimony-Guided Tree Proposals to Accelerate Convergence in Bayesian Phylogenetic Inference
2019· 6 citedOpen Access
Phylogeny Estimation Using Likelihood‐Based Methods
2019· 3 cited
BEAGLE 3: Improved Performance, Scaling, and Usability for a High-Performance Computing Library for Statistical Phylogenetics
Systematic Biology·2019· 277 citedOpen Access
A Bayesian Approach for Estimating Branch-Specific Speciation and Extinction Rates
2019· 69 citedOpen Access
Reply to Nakov et al.: Model choice requires biological insight when studying the ancestral habitat of photosynthetic eukaryotes
Proceedings of the National Academy of Sciences·2017· 15 citedOpen Access
Parallel power posterior analyses for fast computation of marginal likelihoods in phylogenetics
2017· 11 citedOpen Access
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Frequent Co-authors

Fredrik Ronquist(12), David L. Swofford(6), Rasmus Nielsen(5), Jonathan P. Bollback(5), Bruce Rannala(5), Bret Larget(4), Marc A. Suchard(4), David M. Hillis(4), Paul O. Lewis(4), Daniel L. Ayres(3), Aaron E. Darling(3), Sebastian Höhna(3), Cliff Cunningham(3), Brian R. Moore(3), James J. Bull(3), Peter J. Waddell(3), Paul van der Mark(2), Michael J. Landis(2), Tracy A. Heath(2), Peter Beerli(2)