Tomasz Konopka

Biochemistry, Genetics and Molecular Biology · Life Sciences

13h-index1.9kcitations44works0.02yr avg
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Research Topics

Bioinformatics and Genomic Networks(10), Gene expression and cancer classification(9), Genomics and Phylogenetic Studies(8), Cancer Genomics and Diagnostics(7), Genomics and Rare Diseases(7)

Publications43 total

Discovery and systematic characterization of risk variants and genes for coronary artery disease in over a million participants
Nature Genetics·2022· 633 citedOpen Access
Dimensional reduction of phenotypes from 53,000 mouse models reveals a diverse landscape of gene function - data bundle
Zenodo (CERN European Organization for Nuclear Research)·2021Open Access
Dimensional reduction of phenotypes from 53,000 mouse models reveals a diverse landscape of gene function - data bundle
2021Open Access
Diffusion enables integration of heterogeneous data and user-driven learning in a desktop knowledge-base
PLoS Computational Biology·2021· 4 citedOpen Access
Correcting machine learning models using calibrated ensembles with ‘mlensemble’
2021Open Access
A pan-cancer landscape of somatic mutations in non-unique regions of the human genome
Nature Biotechnology·2021· 9 citedOpen Access
Dimensional reduction of phenotypes from 53,000 mouse models reveals a diverse landscape of gene function - data bundle
2021Open Access
Dimensional reduction of phenotypes from 53,000 mouse models reveals a diverse landscape of gene function
2021Open Access
Diffusion enables integration of heterogeneous data and user-driven learning in a desktop knowledge-base - data bundle
Figshare·2021Open Access
Diffusion enables integration of heterogeneous data and user-driven learning in a desktop knowledge-base - data bundle
Zenodo (CERN European Organization for Nuclear Research)·2021Open Access
A pan-ontology view of machine-derived knowledge representations and feedback mechanisms for curation - dataset snapshot
Zenodo (CERN European Organization for Nuclear Research)·2021Open Access
A pan-ontology view of machine-derived knowledge representations and feedback mechanisms for curation
2021· 1 citedOpen Access
A pan-ontology view of machine-derived knowledge representations and feedback mechanisms for curation - dataset snapshot
Figshare·2021Open Access
Dimensional reduction of phenotypes from 53 000 mouse models reveals a diverse landscape of gene function
Bioinformatics Advances·2021· 1 citedOpen Access
Uniform Manifold Approximation and Projection [R package umap version 0.2.7.0]
2020· 1 cited
A pan-ontology view of machine-derived knowledge representations and feedback mechanisms for curation - dataset snapshot
Zenodo (CERN European Organization for Nuclear Research)·2020Open Access
Abstract 1320: The landscape of somatic substitutions in the repetitive genome across cancer types
Cancer Research·2020
A pan-cancer landscape of somatic substitutions in non-unique regions of the human genome
2020· 2 citedOpen Access
Human and mouse essentiality screens as a resource for disease gene discovery
Nature Communications·2020· 119 citedOpen Access
Incremental data integration for tracking genotype-disease associations
PLoS Computational Biology·2020· 8 citedOpen Access
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Frequent Co-authors

Damian Smedley(17), Sebastian Nijman(9), Bianca V. Gapp(5), Vincent Detours(5), Maxime Tarabichi(5), Letizia Vestito(5), Tilmann Bürckstümmer(4), Claudia Kerzendorfer(4), David Gacquer(3), Denis Larsimont(3), Christoph Bock(3), Jonas Demeulemeester(3), Annelien Verfaillie(3), Peter Van Loo(3), Paul S. de Vries(2), Moritz von Scheidt(2), John Danesh(2), Doris Chen(2), Róbert Královics(2), Thijn R. Brummelkamp(2)