Jan Hasenauer

University of Bonn — Germany

Biochemistry, Genetics and Molecular Biology · Life Sciences

46h-index6.5kcitations362works2.42yr avg
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Research Topics

Gene Regulatory Network Analysis(116), Microbial Metabolic Engineering and Bioproduction(40), SARS-CoV-2 and COVID-19 Research(27), Bioinformatics and Genomic Networks(26), Mathematical Biology Tumor Growth(25)

Publications357 total

Scalable branch-and-bound model selection with non-monotonic criteria including AIC, BIC and Mallows's $\mathit{C_p}$
arXiv (Cornell University)·2025Open Access
C-COMPASS: a user-friendly neural network tool profiles cell compartments at protein and lipid levels
Nature Methods·2025Open Access
Assessment of Simulation-based Inference Methods for Stochastic Compartmental Models
arXiv (Cornell University)·2025Open Access
Quantitative modeling of P-TEFb mediated CTD phosphorylation identifies local cooperativity
2025Open Access
HDL-associated phosphatidylserine blunts myeloid activation and protects from atherosclerosis
2025Open Access
PEtab-GUI: A graphical user interface to create, edit and inspect PEtab parameter estimation problems
arXiv (Cornell University)·2025Open Access
Identifying Multi-omics Signatures that characterize Responders to Plant-based Dietary Interventions
2025Open Access
Time-dependent long short-term memory neural cox regression in 2,690 patients with myeloid neoplasias treated with diverse therapies identifies bone marrow related information to be less important than expected in the context of other available clinical parameters: Insights from the AML-001 trial (NCT01074047) and the austrian myeloid registry (NCT04438889) of the AGMT study group
Blood·2025
Data-driven model reveals increased stability of CAG-expanded <i>huntingtin</i> RNA due to MID1 binding
2025Open Access
Endothelial deletion of ADGRF5 (GPR116) promotes fibro-inflammatory EndMT and impairs adaptive thermogenesis in brown adipose tissue
2025Open Access
Using latent representations to link disjoint longitudinal data for mixed-effects regression
arXiv (Cornell University)·2025Open Access
Shiny-Calorie: a context-aware application for indirect calorimetry data analysis and visualization using R
Bioinformatics Advances·2025Open Access
Continuous Circulation of Hepatitis E and A Viruses During COVID-19 Pandemic Lockdowns in Munich, Germany—Experience from Three Years of Wastewater Surveillance
Microorganisms·2025· 1 citedOpen Access
Coupled Epidemiological and Wastewater Modeling at the Urban Scale: A Case Study for Munich
2025· 2 citedOpen Access
Simulation-Based Inference of Cell Migration Dynamics in Complex Spatial Environments
2025Open Access
A dynamic model for Waddington’s landscape accounting for cell-to-cell communication
Mathematical Biosciences·2025· 1 citedOpen Access
From Brown to White: Brown Adipose Tissue Endothelial Cells whiten in Culture Conditions
2025Open Access
Identifiability and uncertainty for ordinary differential equation models with qualitative or semiquantitative data
Current Opinion in Systems Biology·2025Open Access
Latent Transition Analysis for Longitudinal Studies of Post-Acute Infection Syndromes: A Multinational Investigation of Post-COVID-19 Condition
2025Open Access
PEtab.jl: advancing the efficiency and utility of dynamic modelling
Bioinformatics·2025· 2 citedOpen Access
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Frequent Co-authors

Fabian J. Theis(19), Fabian Fröhlich(13), Daniel Weindl(7), Yannik Schälte(7), Carolin Loos(6), Abhishek Bakuli(6), Andreas Wieser(6), Michael Höelscher(6), Leonard Schmiester(5), Elba Raimúndez(5), Tim Hucho(5), Michael Pritsch(5), Laura Olbrich(5), Noemi Castelletti(5), Inge Kroidl(5), Christiane Fuchs(5), Katharina Müller(5), Jens Timmer(4), Julio R. Banga(4), Frank Allgöwer(4)