Nynke L. van Berkum

University of Massachusetts Chan Medical School — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

12h-index16.0kcitations14works0.02yr avg
OpenAlex↗Google Scholar↗Lab page↗

Accepting Students?

No reports yet. Know if this professor is taking students?

Research Topics

Genomics and Chromatin Dynamics(12), Gene expression and cancer classification(6), RNA Research and Splicing(5), Chromosomal and Genetic Variations(4), Genomics and Phylogenetic Studies(3)

Publications14 total

Spatial partitioning of the regulatory landscape of the X-inactivation centre
Nature·2012· 3.1k citedOpen Access
Evidence for Transcript Networks Composed of Chimeric RNAs in Human Cells
PLoS ONE·2012· 234 citedOpen Access
Evidence for Transcript Networks Composed of Chimeric RNAs in Human Cells
RECERCAT (Consorci de Serveis Universitaris de Catalunya)·2012Open Access
Erratum: Mediator and cohesin connect gene expression and chromatin architecture
Nature·2011· 12 citedOpen Access
Mediator and cohesin connect gene expression and chromatin architecture
Nature·2010· 1.9k citedOpen Access
A Consensus of Core Protein Complex Compositions for Saccharomyces cerevisiae
Molecular Cell·2010· 101 citedOpen Access
Hi-C: A Method to Study the Three-dimensional Architecture of Genomes.
Journal of Visualized Experiments·2010· 142 citedOpen Access
Hi-C: A Method to Study the Three-dimensional Architecture of Genomes.
Journal of Visualized Experiments·2010· 494 citedOpen Access
Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
Science·2009· 9.3k citedOpen Access
My5C: web tools for chromosome conformation capture studies
Nature Methods·2009· 96 citedOpen Access
Determining Spatial Chromatin Organization of Large Genomic Regions Using 5C Technology
Methods in molecular biology·2009· 51 citedOpen Access
Genome-Wide Analyses Reveal RNA Polymerase II Located Upstream of Genes Poised for Rapid Response upon S. cerevisiae Stationary Phase Exit
Molecular Cell·2005· 213 citedOpen Access
Protein Interaction Verification and Functional Annotation by Integrated Analysis of Genome-Scale Data
Molecular Cell·2002· 211 citedOpen Access
DNA microarrays: raising the profile
Current Opinion in Biotechnology·2001· 50 cited

Frequent Co-authors

Job Dekker(10), Bryan R. Lajoie(5), Frank C. P. Holstege(4), Erez Lieberman-Aiden(3), Maxim Imakaev(3), Andreas Gnirke(3), J Stamatoyannopoulos(3), Leonid A. Mirny(3), Eric S. Lander(3), Alexandre Reymond(3), Patrick Kemmeren(3), Louise Williams(2), Michael H. Kagey(2), Jamie J. Newman(2), Steve Bilodeau(2), Ye Zhan(2), David A. Orlando(2), Christopher C. Ebmeier(2), Jesse Goossens(2), Peter B. Rahl(2)