Jonathan King

Biochemistry, Genetics and Molecular Biology · Life Sciences

11h-index956citations26works0.02yr avg
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Research Topics

Protein Structure and Dynamics(7), RNA and protein synthesis mechanisms(7), Machine Learning in Materials Science(5), Genomics and Phylogenetic Studies(4), Computational Drug Discovery Methods(4)

Publications26 total

Origin-1: a generative AI platform for <i>de novo</i> antibody design against novel epitopes
2026
Interpreting forces as deep learning gradients improves quality of predicted protein structures
Biophysical Journal·2023· 4 citedOpen Access
Interpreting Molecular Dynamics Forces as Deep Learning Gradients Improves Quality Of Predicted Protein Structures
2023Open Access
<scp>SidechainNet</scp> : An <scp>all‐atom</scp> protein structure dataset for machine learning
Proteins Structure Function and Bioinformatics·2021· 26 citedOpen Access
Author response for "SidechainNet : An All‐Atom Protein Structure Dataset for Machine Learning"
2021
SidechainNet: An All-Atom Protein Structure Dataset for Machine Learning
arXiv (Cornell University)·2020Open Access
Establishing Effective Student Led Outreach Within Multi University, Multi Disciplinary Environments
2020Open Access
Convolutional neural network scoring and minimization in the D3R 2017 community challenge
Journal of Computer-Aided Molecular Design·2018· 47 citedOpen Access
Predict In-Hospital Code Blue Events using Monitor Alarms through Deep Learning Approach
2018· 3 cited
Protein Folding Problem 2 (PDF)
2007
Wrap-and-pack
2004· 5 cited
7.88J / 5.48J / 7.24J / 10.543J Protein Folding Problem, Fall 2003
2003
In vitro unfolding, refolding, and polymerization of human γD crystallin, a protein involved in cataract formation
Protein Science·2003· 175 citedOpen Access
Predicting the Beta-Helix Fold from Protein Sequence Data
Journal of Computational Biology·2002· 44 cited
Phycobiliprotein genes of the marine photosynthetic prokaryote Prochlorococcus: evidence for rapid evolution of genetic heterogeneity
Microbiology·2001· 38 cited
Experimental Design in Feeding Experiments
2001· 15 cited
Predicting the β-helix fold from protein sequence data
2001· 9 cited
Whole Proteome pI Values Correlate with Subcellular Localizations of Proteins for Organisms within the Three Domains of Life
Genome Research·2001· 217 citedOpen Access
The scientific endeavor is based on vigilance, not trust
Science and Engineering Ethics·1999· 6 cited
Polymerization mechanism of polypeptide chain aggregation
Biotechnology and Bioengineering·1997· 6 cited
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Frequent Co-authors

David Ryan Koes(6), Lenore Cowen(3), Matthew Menke(3), Bonnie Berger(3), Claire S. Ting(2), Phil Bradley(2), Russell Schwartz(1), Melissa S. Kosinski‐Collins(1), David P. Goldenberg(1), Lila M. Gierasch(1), Carl Gordon(1), S K Sather(1), Sherwood Casjens(1), Jocelyn Sunseri(1), Paul Francoeur(1), Sallie W. Chisholm(1), Gabrielle Rocap(1), Kari Ruohonen(1), Juhani Kettunen(1), Margaret A. Speed(1)