David T. Jones

Institute of Structural and Molecular Biology — United Kingdom

Biochemistry, Genetics and Molecular Biology · Life Sciences

93h-index53.4kcitations369works18.82yr avg
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Research Topics

Protein Structure and Dynamics(125), Machine Learning in Bioinformatics(92), RNA and protein synthesis mechanisms(76), Enzyme Structure and Function(59), Genomics and Phylogenetic Studies(55)

Publications366 total

AlphaFold Protein Structure Database 2025: a redesigned interface and updated structural coverage
Nucleic Acids Research·2025· 8 citedOpen Access
How to use Narcan (Naloxone HCl Nasal Spray 4 mg) according to boy little
Minnesota Review·2025
Foldclass and Merizo-search: scalable structural similarity search for single- and multi-domain proteins using geometric learning
Bioinformatics·2025· 4 citedOpen Access
Metagenomic-scale analysis of the predicted protein structure universe
2025· 4 citedOpen Access
Metagenomic-Scale Analysis of the Predicted Protein Structure Universe
SSRN Electronic Journal·2025· 4 citedOpen Access
15 Radiosurgery of Intracranial Lesions
2025· 1 cited
CATH v4.4: major expansion of CATH by experimental and predicted structural data
Nucleic Acids Research·2024· 19 citedOpen Access
Exploring structural diversity across the protein universe with The Encyclopedia of Domains
Science·2024· 88 citedOpen Access
Foldclass and Merizo-search: embedding-based deep learning tools for protein domain segmentation, fold recognition and comparison
2024· 8 citedOpen Access
Exploring structural diversity across the protein universe with The Encyclopedia of Domains
2024· 15 citedOpen Access
Merizo: a rapid and accurate protein domain segmentation method using invariant point attention
Nature Communications·2023· 44 citedOpen Access
Machine learning methods for predicting protein structure from single sequences
Current Opinion in Structural Biology·2023· 23 citedOpen Access
AlphaFold — The End of the Protein Folding Problem or the Start of Something Bigger?
WORLD SCIENTIFIC eBooks·2023
Merizo: a rapid and accurate domain segmentation method using invariant point attention
2023· 2 citedOpen Access
Design in the DARK: Learning Deep Generative Models for De Novo Protein Design
2022· 27 citedOpen Access
Ultrafast end-to-end protein structure prediction enables high-throughput exploration of uncharacterized proteins
Proceedings of the National Academy of Sciences·2022· 43 citedOpen Access
The impact of AlphaFold2 one year on
Nature Methods·2022· 189 cited
A guide to machine learning for biologists
Nature Reviews Molecular Cell Biology·2021· 1.9k cited
Differentiable molecular simulation can learn all the parameters in a coarse-grained force field for proteins
PLoS ONE·2021· 29 citedOpen Access
Earthworm distributions are not driven by measurable soil properties. Do they really indicate soil quality?
PLoS ONE·2021· 17 citedOpen Access
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Frequent Co-authors

Kevin Bryson(7), Liam J. McGuffin(6), Domenico Cozzetto(6), Daniel Buchan(5), Janet M. Thornton(5), Julian Gough(4), Jonathan J. Ward(4), Bernard F. Buxton(4), Rita Casadio(4), Jianlin Cheng(4), A. Keith Dunker(3), Péter Tompa(3), Shaun M. Kandathil(3), Hai Fang(3), Petri Törönen(3), Liisa Holm(3), Haixuan Yang(3), Alfonso E. Romero(3), Prajwal Bhat(3), Alberto Paccanaro(3)