Daniel B. Burkhardt

Cell Medica (Switzerland) — Switzerland

Biochemistry, Genetics and Molecular Biology · Life Sciences

26h-index3.6kcitations73works20.12yr avg
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Research Topics

Single-cell and spatial transcriptomics(16), Osteoarthritis Treatment and Mechanisms(14), Cell Image Analysis Techniques(13), Gene Regulatory Network Analysis(7), Tendon Structure and Treatment(6)

Publications71 total

Longitudinal modality prediction learns gene regulatory patterns: insights from a single-cell competition
2026Open Access
Active learning framework leveraging transcriptomics identifies modulators of disease phenotypes
Science·2025· 8 cited
Data from AAnet Resolves a Continuum of Spatially Localized Cell States to Unveil Intratumoral Heterogeneity
2025· 1 citedOpen Access
Supplementary Table 1 from AAnet Resolves a Continuum of Spatially Localized Cell States to Unveil Intratumoral Heterogeneity
2025Open Access
Figures S1-9 from AAnet Resolves a Continuum of Spatially Localized Cell States to Unveil Intratumoral Heterogeneity
2025Open Access
Supplementary Table 2 from AAnet Resolves a Continuum of Spatially Localized Cell States to Unveil Intratumoral Heterogeneity
2025Open Access
Defining and benchmarking open problems in single-cell analysis
Nature Biotechnology·2025· 17 citedOpen Access
AAnet Resolves a Continuum of Spatially Localized Cell States to Unveil Intratumoral Heterogeneity
Cancer Discovery·2025· 2 citedOpen Access
Human iPSC-derived superficial-zone, deep-zone or hybrid chondrocyte organoids for osteochondral defect repair – first in-vivo study in rat
Osteoarthritis and Cartilage·2025
How to build the virtual cell with artificial intelligence: Priorities and opportunities
Cell·2024· 193 citedOpen Access
AAnet resolves a continuum of spatially-localized cell states to unveil tumor complexity
2024· 4 citedOpen Access
Defining and benchmarking open problems in single-cell analysis
2024· 16 citedOpen Access
Abstract C050: Elucidating mechanisms of endocrine-exocrine signaling in obesity-driven pancreatic cancer
Cancer Research·2022· 2 cited
ODP212 Inpatient Euglycemic DKA due to SGLT2 Inhibitors – Lessons From a Case Series and Strategies to Decrease Incidence
Journal of the Endocrine Society·2022Open Access
Immune cells and their inflammatory mediators modify β cells and cause checkpoint inhibitor–induced diabetes
JCI Insight·2022· 47 citedOpen Access
Mapping Phenotypic Plasticity upon the Cancer Cell State Landscape Using Manifold Learning
Cancer Discovery·2022· 70 citedOpen Access
Multimodal single cell data integration challenge: results and lessons learned
2022· 79 citedOpen Access
Multiscale PHATE identifies multimodal signatures of COVID-19
Nature Biotechnology·2022· 78 citedOpen Access
1-deoxysphingolipids bind to COUP-TF to modulate lymphatic and cardiac cell development
Developmental Cell·2021· 23 citedOpen Access
A sandbox for prediction and integration of DNA, RNA, and proteins in single cells
Ghent University Academic Bibliography (Ghent University)·2021· 91 cited
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Frequent Co-authors

Smita Krishnaswamy(24), Guy Wolf(11), David van Dijk(10), Scott Gigante(10), Alexander Tong(10), Fabian J. Theis(6), Manik Kuchroo(5), Patrick Wong(5), Dennis Shung(5), Christopher B. Little(5), Peter Ghosh(5), Matthew Amodio(5), Kevin R. Moon(4), Kristina Yim(4), Matthew Hirn(4), Natalia Ivanova(4), P. Ghosh(4), Martin Cake(4), Robrecht Cannoodt(4), Angela Oliveira Pisco(4)