Parisa Shooshtari

Ontario Institute for Cancer Research — Canada

Biochemistry, Genetics and Molecular Biology · Life Sciences

11h-index470citations44works0.42yr avg
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Research Topics

Single-cell and spatial transcriptomics(13), Gene expression and cancer classification(7), Cancer Genomics and Diagnostics(7), Epigenetics and DNA Methylation(6), Genomics and Chromatin Dynamics(5)

Publications44 total

Viral mimicry acts as a tumor suppressor in colitis
Nature Communications·2026Open Access
Developing a comprehensive database and search tool for single-cell ATAC-seq data
Scientific Reports·2026Open Access
Acinar-specific loss of activating transcription factor 3 restricts KRASG12D mediated transcriptional changes and PanIN progression
Cell Death Discovery·2025Open Access
B cell subsets have different capacities for phagocytosis and subsequent presentation of antigen to cognate T cells 2920
The Journal of Immunology·2025Open Access
B-cell subsets have different capacities for phagocytosis and subsequent presentation of antigen to cognate T cells
The Journal of Immunology·2025Open Access
924: COLITIS IS ASSOCIATED WITH ACTIVATION OF A VIRAL MIMICRY RESPONSE THAT INHIBITS COLONIC TUMORIGENESIS
Gastroenterology·2025
B cell subsets have different capacities for phagocytosis and subsequent presentation of antigen to cognate T cells
2025· 1 citedOpen Access
EZH2 deletion does not affect acinar regeneration but restricts progression to pancreatic cancer in mice
JCI Insight·2024· 1 citedOpen Access
Mouse Models for Pancreatic Ductal Adenocarcinoma are Affected by the cre-driver Used to Promote KRASG12D Activation
Cellular and Molecular Gastroenterology and Hepatology·2024· 3 citedOpen Access
Abstract B082: Oncogenic KRAS-mediated epigenetic reprogramming is altered by loss of Activating Transcription Factor 3
Cancer Research·2024
Maternal Pre-pregnancy Body Mass Index and Human Placental Gene Expression: A Genome-wide Meta-analysis
Placenta·2024
Integrative Data Analysis to Uncover Transcription Factors Involved in Gene Dysregulation of Nine Autoimmune and Inflammatory Diseases
2024Open Access
EZH2 deletion does not impact acinar cell regeneration but restricts progression to pancreatic cancer in mice
2023Open Access
Mouse models for pancreatic ductal adenocarcinoma are affected by the cre-driver used to promote KRAS <sup>G12D</sup> activation
2023· 1 citedOpen Access
Developing OCHROdb, a comprehensive quality checked database of open chromatin regions from sequencing data
Scientific Reports·2023· 4 citedOpen Access
Cell-type classification of cancer single-cell RNA-seq data using the Subsemble ensemble-based machine learning classifier
F1000Research·2023Open Access
The EBV Gastric Cancer Resource (EBV-GCR): A Suite of Tools for Investigating EBV-Associated Human Gastric Carcinogenesis
Viruses·2023· 6 citedOpen Access
Evaluation of single-cell RNAseq labelling algorithms using cancer datasets
Briefings in Bioinformatics·2022· 16 citedOpen Access
Abstract B074: Loss of ATF3 affects the molecular response and epigenetic reprogramming to KRAS-dependent pancreatic ductal adenocarcinoma
Cancer Research·2022
Single-Cell Chromatin Accessibility Data Combined with GWAS Improves Detection of Relevant Cell Types in 59 Complex Phenotypes
International Journal of Molecular Sciences·2022· 3 citedOpen Access
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Frequent Co-authors

Erik Christensen(8), Chris Cotsapas(7), Michael Brudno(7), Fatemeh Mousavi(7), Christopher L. Pin(7), Mia Husić(6), Alaine Naidas(6), Mickenzie B. Martin(6), Arun Ramani(5), Ryan R. Brinkman(4), Ping Luo(4), Alaina Mahalanabis(4), Trevor J. Pugh(4), Steven M. Kerfoot(4), J. Javier Díaz-Mejía(3), Nader Hosseini Naghavi(3), Richard Zhang(3), Heather C. Craig(3), Bryan Heit(3), Habil Zare(2)