Rémi Planel

Institut Pasteur — France

Biochemistry, Genetics and Molecular Biology · Life Sciences

12h-index1.0kcitations20works36.02yr avg
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Research Topics

Genomics and Phylogenetic Studies(13), Bacteriophages and microbial interactions(6), Bioinformatics and Genomic Networks(5), RNA and protein synthesis mechanisms(4), Microbial Metabolic Engineering and Bioproduction(4)

Publications20 total

Exploring the diversity of anti-defense systems across prokaryotes, phages and mobile genetic elements
Nucleic Acids Research·2024· 39 citedOpen Access
A Comprehensive Resource for Exploring Antiphage Defense: DefenseFinder Webservice,Wiki and Databases
Peer Community Journal·2024· 66 citedOpen Access
Exploring the diversity of anti-defense systems across prokaryotes, phages, and mobile genetic elements
2024· 14 citedOpen Access
A Comprehensive Resource for Exploring Antiphage Defense: DefenseFinder Webservice, Wiki and Databases.
2024· 25 citedOpen Access
QTL mapping in CC mice using qtl2-derived tools (ccqtl)
SPIRE - Sciences Po Institutional REpository·2023
Correction: PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph
PLoS Computational Biology·2021· 6 citedOpen Access
MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic, pangenomic and metabolic comparative analysis
HAL (Le Centre pour la Communication Scientifique Directe)·2020
On-target activity predictions enable improved CRISPR–dCas9 screens in bacteria
Nucleic Acids Research·2020· 78 citedOpen Access
PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph
PLoS Computational Biology·2020· 240 citedOpen Access
PPanGGOLiN: depicting microbial diversity via a partitioned pangenome graph
2019· 22 citedOpen Access
MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic, pangenomic and metabolic comparative analysis
Nucleic Acids Research·2019· 335 citedOpen Access
RecPhyloXML: A format for reconciled gene trees
UCL Discovery (University College London)·2019
PanGBank: depicting microbial species diversity via PPanGGOLiN
HAL (Le Centre pour la Communication Scientifique Directe)·2019
MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic and metabolic comparative analysis
HAL (Le Centre pour la Communication Scientifique Directe)·2018Open Access
RecPhyloXML: a format for reconciled gene trees
Bioinformatics·2018· 32 citedOpen Access
Ancestral Genome Estimation Reveals the History of Ecological Diversification in Agrobacterium
Genome Biology and Evolution·2017· 36 citedOpen Access
MicroScope—an integrated resource for community expertise of gene functions and comparative analysis of microbial genomic and metabolic data
Briefings in Bioinformatics·2017· 67 citedOpen Access
No Evidence That Nitrogen Limitation Influences the Elemental Composition of Isopod Transcriptomes and Proteomes
Molecular Biology and Evolution·2016· 10 citedOpen Access
Ancestral genome estimation reveals the history of ecological diversification in <i>Agrobacterium</i>
2015· 1 citedOpen Access
Ribosomal proteins: Toward a next generation standard for prokaryotic systematics?
Molecular Phylogenetics and Evolution·2014· 72 cited

Frequent Co-authors

David Vallenet(10), Alexandra Calteau(9), Guillaume Gautreau(8), Laura Burlot(7), Mathieu Dubois(6), Adelme Bazin(6), Claudine Médigue(6), Mathieu Gachet(6), Aurélie Lajus(4), Jordan Langlois(4), Amandine Perrin(4), Stéphane Cruveiller(4), Catherine Matias(4), Christophe Ambroise(4), Eduardo P. C. Rocha(4), Vincent Daubin(4), Florian Tesson(4), Aude Bernheim(4), Mylène Beuvin(3), Johan Rollin(3)