Christophe Ambroise

Biochemistry, Genetics and Molecular Biology · Life Sciences

25h-index4.5kcitations145works0.52yr avg
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Research Topics

Bioinformatics and Genomic Networks(31), Bayesian Methods and Mixture Models(30), Gene expression and cancer classification(28), Statistical Methods and Inference(20), Advanced Clustering Algorithms Research(16)

Publications145 total

Causal inference of post-transcriptional regulation timelines from long-read sequencing in Arabidopsis thaliana
arXiv (Cornell University)·2025Open Access
A strategy for studying epigenetic diversity in natural populations: proof of concept in poplar and oak
Journal of Experimental Botany·2024· 3 citedOpen Access
Intégration tardive de données multimodales par modèles à blocs stochastiques
SPIRE - Sciences Po Institutional REpository·2024Open Access
Bioinformatics manual for population epigenomics combining whole-genome and target genome sequencing v1
2024Open Access
mimiSBM: Mixture of Multilayer Integrator Stochastic Block Models
2024Open Access
Mixture of multilayer stochastic block models for multiview clustering
arXiv (Cornell University)·2024Open Access
Holistic view of the seascape dynamics and environment impact on macro-scale genetic connectivity of marine plankton populations
BMC Ecology and Evolution·2023· 5 citedOpen Access
Epigenetic Variation in Tree Evolution: a case study in black poplar ( <i>Populus nigra</i> )
2023· 6 citedOpen Access
Mixture of stochastic block models for multiview clustering
2023Open Access
Additional file 1 of Holistic view of the seascape dynamics and environment impact on macro-scale genetic connectivity of marine plankton populations
Figshare·2023Open Access
A Sparse Mixture-of-Experts Model With Screening of Genetic Associations to Guide Disease Subtyping
Frontiers in Genetics·2022· 5 citedOpen Access
Inference of Multiscale Gaussian Graphical Model
arXiv (Cornell University)·2022Open Access
Correction: PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph
PLoS Computational Biology·2021· 6 citedOpen Access
Hierarchical correction of p-values via an ultrametric tree running Ornstein-Uhlenbeck process
Computational Statistics·2021· 4 citedOpen Access
Adjacency-Constrained Clustering of a Block-Diagonal Similarity Matrix [R package adjclust version 0.6.3]
2021
Accounting for Missing Actors in Interaction Network Inference from Abundance Data
Journal of the Royal Statistical Society Series C (Applied Statistics)·2021· 5 cited
How marine currents and environment shape plankton genomic differentiation: a mosaic view from <i>Tara</i> Oceans metagenomic data
2021· 5 citedOpen Access
AI-based mobile application to fight antibiotic resistance
Nature Communications·2021· 89 citedOpen Access
A new method for estimating mixing ability: application to winter wheat variety mixtures and propositions for plant breeding
Organic Eprints (International Centre for Research in Organic Food Systems, and Research Institute of Organic Agriculture)·2021Open Access
metaVaR: Introducing metavariant species models for reference-free metagenomic-based population genomics
PLoS ONE·2020· 7 citedOpen Access
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Frequent Co-authors

Étienne Birmelé(6), Yves Grandvalet(6), Pierre Latouche(5), Geoffrey J. McLachlan(4), Catherine Matias(4), G. Govaert(4), Hugo Zanghi(3), Julien Chiquet(3), Guillaume Gautreau(2), Adelme Bazin(2), Mathieu Gachet(2), Rémi Planel(2), Laura Burlot(2), Mathieu Dubois(2), Amandine Perrin(2), Claudine Médigue(2), Alexandra Calteau(2), Stéphane Cruveiller(2), Eduardo P. C. Rocha(2), David Vallenet(2)