Yang Shen

Nanjing University of Science and Technology — China

Biochemistry, Genetics and Molecular Biology · Life Sciences

41h-index10.5kcitations228works8.22yr avg
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Research Topics

Protein Structure and Dynamics(40), Computational Drug Discovery Methods(33), RNA and protein synthesis mechanisms(18), Machine Learning in Bioinformatics(14), Cancer Cells and Metastasis(12)

Publications226 total

Multimodal diffusion for joint design of protein sequence and structure
Protein Science·2025Open Access
Comprehensive studies on the regulation of non-small cell lung cancer by Zanthoxyli Pericarpium: Insights from network pharmacology and molecular docking
Chinese Journal of Analytical Chemistry·2025· 1 citedOpen Access
Integrated antibody language model accelerates IgG screening and design for broad-spectrum antiviral therapy
iScience·2025Open Access
The mRNA and protein of IL-8 oppositely regulate PRRSV replication via nucleoprotein and 14-3-3γ
Journal of Virology·2025Open Access
Oxytranscriptome of soybean seedlings under short-term cadmium treatment
Scientific Reports·2025Open Access
Evaluation of enzyme activity predictions for variants of unknown significance in Arylsulfatase A
UNC Libraries·2025Open Access
Predicting driving comfort in autonomous vehicles using road information and multi-head attention models
Nature Communications·2025· 23 citedOpen Access
Efficacy and safety of neoadjuvant SHR-A1811 with or without pyrotinib in women with locally advanced or early HER2-positive breast cancer: a randomized, open-label, phase II trial
Annals of Oncology·2025· 16 citedOpen Access
Assessing the predicted impact of single amino acid substitutions in MAPK proteins for CAGI6 challenges
Human Genetics·2025Open Access
Enhancing the De-identification of Personally Identifiable Information in Educational Data
arXiv (Cornell University)·2025Open Access
CAGI6 ID panel challenge: assessment of phenotype and variant predictions in 415 children with neurodevelopmental disorders (NDDs)
Human Genetics·2025· 2 citedOpen Access
Delving Deep into Simplicity Bias for Long-Tailed Image Recognition
International Journal of Computer Vision·2025· 1 cited
Titanium-Catalyzed Ring Opening Olefination of Silacyclobutanes
Chinese Journal of Organic Chemistry·2025· 1 cited
Explanatory Instructions: Towards Unified Vision Tasks Understanding and Zero-shot Generalization
arXiv (Cornell University)·2024Open Access
Assessing the predicted impact of single amino acid substitutions in calmodulin for CAGI6 challenges
Human Genetics·2024Open Access
Improved Prediction of Photovoltaic Power based on LightGBM and Multi-source Meteorological Data
2024
Developing a predictive model for the maximum power conversion efficiency of inorganic perovskites: A combined approach using density functional theory and machine learning
Computational Materials Science·2024· 4 cited
Structure-informed protein language models are robust predictors for variant effects
Human Genetics·2024· 19 citedOpen Access
Assessing predictions on fitness effects of missense variants in HMBS in CAGI6
Human Genetics·2024· 2 citedOpen Access
Equiangular Basis Vectors: A Novel Paradigm for Classification Tasks
International Journal of Computer Vision·2024· 2 cited
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Frequent Co-authors

Mostafa Karimi(8), Zhangyang Wang(8), Sándor Vajda(8), Yuning You(7), Tianlong Chen(7), Dima Kozakov(7), Huiping Liu(5), Dmitri Beglov(5), Marc F. Lensink(5), Paul A. Bates(5), Brian G. Pierce(5), Juan Fernández‐Recio(5), Yue Cao(5), Yandong Zhang(5), Geoffrey L. Greene(4), Yuzhi Jia(4), Nurmaa K. Dashzeveg(4), Sergei Grudinin(4), Chaok Seok(4), Alexandre M. J. J. Bonvin(4)