Andreas Gnirke

Broad Institute — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

30h-index35.8kcitations44works2.02yr avg
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Research Topics

Genomics and Phylogenetic Studies(25), RNA and protein synthesis mechanisms(14), RNA modifications and cancer(11), Molecular Biology Techniques and Applications(10), RNA Research and Splicing(8)

Publications44 total

Direct genetic transformation bypasses tumor-associated DNA methylation alterations
Genome biology·2025· 3 citedOpen Access
An Anaerobic Pathogen Rewires Host Metabolism to Fuel Oxidative Growth in the Inflamed Gut
2025· 1 citedOpen Access
Clinical Sequencing Uncovers Origins and Evolution of Lassa Virus
Cell·2015· 309 citedOpen Access
Trinity: RNA-Seq De novo Assembly Application
2015
Simultaneous generation of many RNA-seq libraries in a single reaction
Nature Methods·2015· 311 cited
Enhanced methods for unbiased deep sequencing of Lassa and Ebola RNA viruses from clinical and biological samples
Genome biology·2014· 151 citedOpen Access
Erratum: Corrigendum: Comparative analysis of RNA sequencing methods for degraded or low-input samples
Nature Methods·2014· 2 citedOpen Access
Enhanced methods for unbiased deep sequencing of Lassa and Ebola RNA viruses from clinical and biological samples
Genome Biology·2014· 107 citedOpen Access
Erratum: Comparative analysis of RNA sequencing methods for degraded or low-input samples (Nature Methods (2013) 10 (623-629 )
2014· 1 cited
Cellular Source and Mechanisms of High Transcriptome Complexity in the Mammalian Testis
Cell Reports·2013· 622 citedOpen Access
Comparative analysis of RNA sequencing methods for degraded or low-input samples
Nature Methods·2013· 35 citedOpen Access
Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells
Nature·2013· 1.3k citedOpen Access
The African coelacanth genome provides insights into tetrapod evolution
Nature·2013· 680 citedOpen Access
Mutations causing medullary cystic kidney disease type 1 lie in a large VNTR in MUC1 missed by massively parallel sequencing
Nature Genetics·2013· 305 citedOpen Access
Comprehensive comparative analysis of RNA sequencing methods for degraded or low input samples
2013· 541 citedOpen Access
Paired-end sequencing of Fosmid libraries by Illumina
Genome Research·2012· 54 citedOpen Access
Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes
Genome biology·2012· 254 citedOpen Access
RNA-Seq methods for imperfect samples: development, evaluation and applications
Genome biology·2011· 24 citedOpen Access
RNA-Seq methods for imperfect samples: development, evaluation and applications
Genome biology·2011· 51 citedOpen Access
Full-length transcriptome assembly from RNA-Seq data without a reference genome
Nature Biotechnology·2011· 22.0k citedOpen Access
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Frequent Co-authors

Joshua Z. Levin(26), Chad Nusbaum(25), Xian Adiconis(16), Aviv Regev(15), David B. Jaffe(12), Dawn Thompson(9), Bruce W. Birren(9), Eric S. Lander(9), Moran Yassour(8), Nir Friedman(8), Aaron M. Berlin(8), Timothy R. Fennell(7), Michele Busby(7), Andrey Sivachenko(7), Nathalie Pochet(7), Mitchell Guttman(6), Sarah Young(6), Fan Lin(5), Evan Mauceli(5), Georgia Giannoukos(5)