Aviv Regev

Broad Institute — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

205h-index220.8kcitations965works17.22yr avg
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Research Topics

Single-cell and spatial transcriptomics(306), Cancer Genomics and Diagnostics(98), RNA Research and Splicing(78), Cell Image Analysis Techniques(74), Immune Cell Function and Interaction(68)

Publications961 total

DISCO-seq: 3D single-cell transcriptomics of intact biological systems
2025Open Access
Spatially defined multicellular functional units in colorectal cancer revealed from single cell and spatial transcriptomics
eLife·2025· 1 citedOpen Access
Author response: Spatially defined multicellular functional units in colorectal cancer revealed from single cell and spatial transcriptomics
2025Open Access
Sparse Mixture-of-Experts for Multi-Channel Imaging: Are All Channel Interactions Required?
arXiv (Cornell University)·2025Open Access
Publisher Correction: Deep-learning-based virtual screening of antibacterial compounds
Nature Biotechnology·2025Open Access
Deep-learning-based virtual screening of antibacterial compounds
Nature Biotechnology·2025· 2 cited
Tissue and cellular spatiotemporal dynamics in colon aging
Nature Biotechnology·2025· 1 citedOpen Access
A cellular and spatial atlas of TP53-associated tissue remodeling defines a multicellular tumor ecosystem in lung adenocarcinoma
Nature Cancer·2025· 2 citedOpen Access
A multimodal atlas of COVID-19 severity identifies hallmarks of dysregulated immunity
2025Open Access
Gene context drift identifies drug targets to mitigate cancer treatment resistance
Cancer Cell·2025· 5 citedOpen Access
Characterizing protein sequence determinants of nuclear condensates by high-throughput pooled imaging with CondenSeq
Nature Methods·2025· 5 citedOpen Access
Limitations of cell embedding metrics assessed using drifting islands
Nature Biotechnology·2025· 6 cited
Gene-embedding-based prediction and functional evaluation of perturbation expression responses with PRESAGE
2025· 2 citedOpen Access
Single cell profiling of human airway identifies tuft-ionocyte progenitor cells displaying cytokine-dependent differentiation bias in vitro
Nature Communications·2025· 8 citedOpen Access
Biomni: A General-Purpose Biomedical AI Agent
2025· 47 citedOpen Access
Tumor and immune reprogramming during immunotherapy in advanced renal cell carcinoma
Cancer Cell·2025· 3 citedOpen Access
PerTurboAgent: A Self-Planning Agent for Boosting Sequential Perturb-seq Experiments
2025· 1 citedOpen Access
Interactions between cancer cells and immune cells drive transitions to mesenchymal-like states in glioblastoma
Cancer Cell·2025· 1 cited
Joint Embedding vs Reconstruction: Provable Benefits of Latent Space Prediction for Self Supervised Learning
arXiv (Cornell University)·2025· 1 citedOpen Access
SlideCNA: spatial copy number alteration detection from Slide-seq-like spatial transcriptomics data
Genome biology·2025Open Access
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Frequent Co-authors

Eric S. Lander(12), Orit Rozenblatt–Rosen(10), Nir Hacohen(9), Rahul Satija(8), Itay Tirosh(7), Nir Friedman(6), Karthik Shekhar(6), Feng Zhang(6), Mitchell Guttman(6), Manuel Garber(6), John L. Rinn(6), Danielle Dionne(6), Joshua Z. Levin(5), Ido Amit(5), Xian Adiconis(5), Raktima Raychowdhury(5), Alex K. Shalek(5), B Bernstein(5), Nir Yosef(5), John J. Trombetta(4)