Julia Waldman

Broad Institute — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

25h-index7.9kcitations61works19.82yr avg
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Research Topics

Single-cell and spatial transcriptomics(37), Cancer Genomics and Diagnostics(23), Cancer Cells and Metastasis(9), RNA Research and Splicing(6), RNA modifications and cancer(6)

Publications60 total

Single cell profiling of human airway identifies tuft-ionocyte progenitor cells displaying cytokine-dependent differentiation bias in vitro
Nature Communications·2025· 8 citedOpen Access
SlideCNA: spatial copy number alteration detection from Slide-seq-like spatial transcriptomics data
Genome biology·2025Open Access
Author Correction: A multi-modal single-cell and spatial expression map of metastatic breast cancer biopsies across clinicopathological features
Nature Medicine·2025Open Access
A multi-modal single-cell and spatial expression map of metastatic breast cancer biopsies across clinicopathological features
Nature Medicine·2024· 50 citedOpen Access
Protective role for kidney TREM2 macrophages in obesity- and diabetes-induced kidney injury
Cell Reports·2024· 33 citedOpen Access
A spatial cell atlas of neuroblastoma reveals developmental, epigenetic and spatial axis of tumor heterogeneity
2024· 28 citedOpen Access
A deep lung cell atlas reveals cytokine-mediated lineage switching of a rare cell progenitor of the human airway epithelium
2023· 10 citedOpen Access
Multi-modal skin atlas identifies a multicellular immune-stromal community associated with altered cornification and specific T cell expansion in atopic dermatitis
2023· 10 citedOpen Access
Inference of single cell profiles from histology stains with the Single Cell omics from Histology Analysis Framework (SCHAF)
2023· 34 citedOpen Access
SlideCNA: Spatial copy number alteration detection from Slide-seq-like spatial transcriptomics data
2022Open Access
SnFFPE-Seq: towards scalable single nucleus RNA-Seq of formalin-fixed paraffin-embedded (FFPE) tissue
2022· 26 citedOpen Access
Single-nucleus and spatial transcriptome profiling of pancreatic cancer identifies multicellular dynamics associated with neoadjuvant treatment
Nature Genetics·2022· 367 citedOpen Access
Single-nucleus cross-tissue molecular reference maps toward understanding disease gene function
Science·2022· 402 citedOpen Access
Single-cell RNA-seq reveals cell type–specific molecular and genetic associations to lupus
Science·2022· 498 citedOpen Access
Abstract PD6-03: Spatio-molecular dissection of the breast cancer metastatic microenvironment
Cancer Research·2022· 1 cited
Joint single-cell measurements of nuclear proteins and RNA in vivo
Nature Methods·2021· 128 citedOpen Access
Spatially organized multicellular immune hubs in human colorectal cancer
Cell·2021· 729 citedOpen Access
Single-nucleus cross-tissue molecular reference maps to decipher disease gene function
2021· 27 citedOpen Access
Obesity-instructed <i> TREM2 <sup>high</sup> </i> macrophages identified by comparative analysis of diabetic mouse and human kidney at single cell resolution
2021· 14 cited
HTAPP_Dissociation of human primary colorectal cancer resection specimens into single cell suspension for single cell RNA-seq v2
2021Open Access
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Frequent Co-authors

Aviv Regev(45), Michal Slyper(36), Orit Rozenblatt–Rosen(32), Danielle Dionne(28), Lan Nguyễn(20), Eugene Drokhlyansky(16), Bruce E. Johnson(16), Sébastien Vigneau(15), Judit Jané‐Valbuena(14), Asaf Rotem(14), Orr Ashenberg(13), Michael S. Cuoco(12), Jingyi Wu(11), Alexander M. Tsankov(10), Caroline Porter(10), Isaac Wakiro(10), Johanna Klughammer(10), Nicholas Van Wittenberghe(10), Ofir Cohen(9), Nikhil Wagle(9)