Daria D. Nikolaeva

Skolkovo Institute of Science and Technology — Russia

Biochemistry, Genetics and Molecular Biology · Life Sciences

7h-index348citations25works0.02yr avg
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Research Topics

Genomics and Chromatin Dynamics(13), Protein Degradation and Inhibitors(11), Cancer Genomics and Diagnostics(7), Chromatin Remodeling and Cancer(6), RNA and protein synthesis mechanisms(3)

Publications25 total

Optimizing Dietary Fiber Intake: Strategies for Human Nutrition and Food Science
Annual Review of Food Science and Technology·2026
Mechanistic insights into microbiome-dependent and personalized responses to dietary fibre in a randomized controlled trial
2025Open Access
Data on the temporal changes in soil properties and microbiome composition after a jet-fuel contamination during the pot and field experiments
Data in Brief·2022· 9 citedOpen Access
The Influence of Kerosene on Microbiomes of Diverse Soils
Life·2022· 41 citedOpen Access
Data on the temporal changes in soil properties and microbiome composition after a jet-fuel contamination during the pot and field experiments
Figshare·2022Open Access
Simplification of Ribosomes in Bacteria with Tiny Genomes
Molecular Biology and Evolution·2020· 26 citedOpen Access
Insights gained from a comprehensive all-against-all transcription factor binding motif benchmarking study
Genome biology·2020· 76 citedOpen Access
Data for the paper "Insights gained from a comprehensive all-against-all transcription factor binding motif benchmarking study".
2020· 1 citedOpen Access
Data for the paper "Insights gained from a comprehensive all-against-all transcription factor binding motif benchmarking study".
Zenodo (CERN European Organization for Nuclear Research)·2020Open Access
Additional file 3 of Insights gained from a comprehensive all-against-all transcription factor binding motif benchmarking study
Figshare·2020Open Access
Additional file 2 of Insights gained from a comprehensive all-against-all transcription factor binding motif benchmarking study
Figshare·2020Open Access
Additional file 5 of Insights gained from a comprehensive all-against-all transcription factor binding motif benchmarking study
Figshare·2020Open Access
Additional file 7 of Insights gained from a comprehensive all-against-all transcription factor binding motif benchmarking study
Figshare·2020Open Access
Additional file 6 of Insights gained from a comprehensive all-against-all transcription factor binding motif benchmarking study
Figshare·2020Open Access
Additional file 4 of Insights gained from a comprehensive all-against-all transcription factor binding motif benchmarking study
Figshare·2020Open Access
H3K4me3, H3K9ac, H3K27ac, H3K27me3 and H3K9me3 Histone Tags Suggest Distinct Regulatory Evolution of Open and Condensed Chromatin Landmarks
Cells·2019· 123 citedOpen Access
Simplification of ribosomes in bacteria with tiny genomes
2019· 5 citedOpen Access
Negative selection maintains transcription factor binding motifs in human cancer
BMC Genomics·2016· 16 citedOpen Access
Additional file 4: Table S3. of Negative selection maintains transcription factor binding motifs in human cancer
Figshare·2016Open Access
Additional file 2: Table S2. of Negative selection maintains transcription factor binding motifs in human cancer
Figshare·2016Open Access
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Frequent Co-authors

Ilya E. Vorontsov(17), Vsevolod J. Makeev(17), Ivan V. Kulakovskiy(17), Dmitry Penzar(10), Giovanna Ambrosini(9), Romain Groux(9), Oriol Fornés(9), Benoît Ballester(9), Jan Grau(9), Ivo Große(9), Philipp Bücher(9), Grigory Khimulya(8), Elena Lukianova(7), Irina A. Eliseeva(7), Mikhail S. Gelfand(5), Pavel V. Shelyakin(3), И. Н. Семенков(3), Maria N. Tutukina(3), Anna Sharapova(3), Sergey Lednev(3)