Dmitry Penzar

Lomonosov Moscow State University — Russia

Biochemistry, Genetics and Molecular Biology · Life Sciences

15h-index9.9kcitations52works15.32yr avg
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Research Topics

Genomics and Chromatin Dynamics(23), RNA and protein synthesis mechanisms(14), Genomics and Phylogenetic Studies(11), Biomedical Text Mining and Ontologies(7), Protein Degradation and Inhibitors(6)

Publications52 total

Inferring binding specificities of human transcription factors with the wisdom of crowds
2025Open Access
Cross-platform motif discovery and benchmarking to explore binding specificities of poorly studied human transcription factors
Communications Biology·2025· 3 citedOpen Access
GAME: Genomic API for Model Evaluation
2025Open Access
MEX-Archipelago data
Zenodo (CERN European Organization for Nuclear Research)·2025· 2 citedOpen Access
Massively parallel characterization of transcriptional regulatory elements
Nature·2025· 61 citedOpen Access
A generative framework for enhanced cell-type specificity in rationally designed mRNAs
2024· 4 citedOpen Access
GENA-LM: a family of open-source foundational DNA language models for long sequences
Nucleic Acids Research·2024· 45 citedOpen Access
Cross-platform DNA motif discovery and benchmarking to explore binding specificities of poorly studied human transcription factors
2024· 1 citedOpen Access
A community effort to optimize sequence-based deep learning models of gene regulation
Nature Biotechnology·2024· 25 citedOpen Access
The species Severe acute respiratory syndrome-related coronavirus: classifying 2019-nCoV and naming it SARS-CoV-2
UNC Libraries·2024· 1 citedOpen Access
PhyloBench: A Benchmark for Evaluating Phylogenetic Programs
Molecular Biology and Evolution·2024· 4 citedOpen Access
GENA-Web - GENomic Annotations Web Inference using DNA language models
2024· 3 citedOpen Access
Ribonanza: deep learning of RNA structure through dual crowdsourcing
2024· 26 citedOpen Access
CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods
Genome biology·2024· 54 citedOpen Access
MEX-Archipelago data
Zenodo (CERN European Organization for Nuclear Research)·2024Open Access
PhyloBench: a Benchmark for Evaluating Phylogenetic Programs
2023Open Access
PhyloBench: a Benchmark for Evaluating Phylogenetic Programs
2023Open Access
Massively parallel characterization of transcriptional regulatory elements in three diverse human cell types
Zenodo (CERN European Organization for Nuclear Research)·2023· 1 citedOpen Access
LegNet: a best-in-class deep learning model for short DNA regulatory regions
Bioinformatics·2023· 40 citedOpen Access
GENA-LM: A Family of Open-Source Foundational DNA Language Models for Long Sequences
2023· 53 citedOpen Access
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Frequent Co-authors

Ivan V. Kulakovskiy(24), Ilya E. Vorontsov(16), Vsevolod J. Makeev(15), Sergey Spirin(12), Arsenii Zinkevich(11), Oriol Fornés(11), Jan Grau(11), Ivo Große(11), Philipp Bücher(11), Giovanna Ambrosini(10), Daria D. Nikolaeva(9), Romain Groux(8), Benoît Ballester(8), Mikhail Krivozubov(8), Alexander V. Favorov(5), Fedor Kolpakov(5), Victor Tkachev(5), Anton Buzdin(5), G. A. Meshcheryakov(5), Sergey Abramov(4)