Aarthi Venkat

Broad Institute — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

8h-index640citations34works0.82yr avg
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Research Topics

Single-cell and spatial transcriptomics(9), Gene expression and cancer classification(8), Cell Image Analysis Techniques(6), Cancer Immunotherapy and Biomarkers(4), Immunotherapy and Immune Responses(4)

Publications34 total

Data from AAnet Resolves a Continuum of Spatially Localized Cell States to Unveil Intratumoral Heterogeneity
2025· 1 citedOpen Access
Supplementary Table 1 from AAnet Resolves a Continuum of Spatially Localized Cell States to Unveil Intratumoral Heterogeneity
2025Open Access
Figures S1-9 from AAnet Resolves a Continuum of Spatially Localized Cell States to Unveil Intratumoral Heterogeneity
2025Open Access
Supplementary Table 2 from AAnet Resolves a Continuum of Spatially Localized Cell States to Unveil Intratumoral Heterogeneity
2025Open Access
AAnet Resolves a Continuum of Spatially Localized Cell States to Unveil Intratumoral Heterogeneity
Cancer Discovery·2025· 2 citedOpen Access
Mapping the gene space at single-cell resolution with gene signal pattern analysis
Nature Computational Science·2024· 1 citedOpen Access
Beta cells are essential drivers of pancreatic ductal adenocarcinoma development
2024· 1 citedOpen Access
Abstract PR-05: Endocrine beta-cell stress promotes pancreatic ductal adenocarcinoma through endocrine-exocrine cell crosstalk
Cancer Research·2024
Single-cell analysis reveals transcriptional dynamics in healthy primary parathyroid tissue
Genome Research·2024Open Access
AAnet resolves a continuum of spatially-localized cell states to unveil tumor complexity
2024· 4 citedOpen Access
Directed Scattering for Knowledge Graph-Based Cellular Signaling Analysis
2024· 1 cited
Abstract B049: Pancreatic beta cell stress pathways drive pancreatic ductal adenocarcinoma development in obesity
Cancer Research·2024
Revealing dynamic temporal regulatory networks driving cancer cell state plasticity with neural ODE-based optimal transport
Research Square (Research Square)·2023· 1 citedOpen Access
Mapping the gene space at single-cell resolution with gene signal pattern analysis
2023· 1 citedOpen Access
Directed Scattering for Knowledge Graph-based Cellular Signaling Analysis
arXiv (Cornell University)·2023Open Access
Graph Fourier MMD for Signals on Graphs
2023· 2 cited
PD-1 maintains CD8 T cell tolerance towards cutaneous neoantigens
Nature·2023· 70 citedOpen Access
Inferring dynamic regulatory interaction graphs from time series data with perturbations
PubMed·2023· 2 citedOpen Access
Multiscale geometric and topological analyses for characterizing and predicting immune responses from single cell data
Trends in Immunology·2023· 7 cited
Graph Fourier MMD for Signals on Graphs
arXiv (Cornell University)·2023Open Access
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Frequent Co-authors

Smita Krishnaswamy(24), Scott E. Youlten(11), Matthew Amodio(9), Christine L. Chaffer(9), Beatriz P. San Juan(8), Nikhil S. Joshi(7), Daniel B. Burkhardt(7), Carley A. Purcell(6), Andrew Benz(6), Jeff Holst(6), Cerys S. McCool(6), Joakim Lundeberg(6), David van Dijk(6), Leonard D. Goldstein(6), Sarah Kummerfeld(6), Shabarni Gupta(6), John G. Lock(6), Martina Damo(5), Eric Fagerberg(5), Daniel Neumann(5)