Jai Ram Rideout

Amec Foster Wheeler (United States) — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

26h-index34.5kcitations69works0.32yr avg
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Research Topics

Gut microbiota and health(21), Microbial Community Ecology and Physiology(17), Genomics and Phylogenetic Studies(16), Genetics, Bioinformatics, and Biomedical Research(14), Metabolomics and Mass Spectrometry Studies(12)

Publications69 total

scikit-bio/scikit-bio: scikit-bio 0.7.2
Zenodo (CERN European Organization for Nuclear Research)·2026Open Access
cogent3/cogent3: REL: 2026.2.3a1
Zenodo (CERN European Organization for Nuclear Research)·2026Open Access
cogent3/cogent3: REL: 2026.1.20a1
Zenodo (CERN European Organization for Nuclear Research)·2026Open Access
cogent3/cogent3: REL: 2026.1.12a1
Zenodo (CERN European Organization for Nuclear Research)·2026Open Access
cogent3/cogent3: REL: 2026.1.6a1
Zenodo (CERN European Organization for Nuclear Research)·2026Open Access
Scikit-bio: a fundamental Python library for biological omic data analysis
Nature Methods·2025· 2 cited
SunPy: A Python package for Solar Physics
The Journal of Open Source Software·2020· 44 citedOpen Access
Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
Nature Biotechnology·2019· 833 citedOpen Access
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
Nature Biotechnology·2019· 22.2k citedOpen Access
Domestic canines do not display evidence of gut microbial dysbiosis in the presence of Clostridioides (Clostridium) difficile, despite cellular susceptibility to its toxins
Anaerobe·2019· 27 citedOpen Access
Decreased Fecal Bacterial Diversity and Altered Microbiome in Children Colonized With <i>Clostridium difficile</i>
Journal of Pediatric Gastroenterology and Nutrition·2018· 12 citedOpen Access
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
2018· 578 citedOpen Access
q2-longitudinal: Longitudinal and Paired-Sample Analyses of Microbiome Data
mSystems·2018· 315 citedOpen Access
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
2018· 189 citedOpen Access
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
2018· 875 citedOpen Access
An Introduction to Applied Bioinformatics: a free, open, and interactive text.
Journal of Open Source Education·2018· 18 citedOpen Access
An Introduction To Applied Bioinformatics
Zenodo (CERN European Organization for Nuclear Research)·2018Open Access
Qiita: rapid, web-enabled microbiome meta-analysis
Nature Methods·2018· 678 citedOpen Access
Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin
Microbiome·2018· 5.6k citedOpen Access
Optimizing taxonomic classification of marker gene amplicon sequences
2018· 34 citedOpen Access
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Frequent Co-authors

J. Gregory Caporaso(36), Rob Knight(28), Evan Bolyen(25), John Chase(20), Nicholas A. Bokulich(17), Daniel McDonald(17), Matthew R. Dillon(13), Peter J. Turnbaugh(11), Gavin Huttley(10), José A. Navas-Molina(10), Arron Shiffer(10), Yoshiki Vázquez‐Baeza(10), William A. Walters(10), Benjamin D. Kaehler(9), Jennifer Fouquier(8), Scott T. Kelley(8), John R. Spear(7), José C. Clemente(7), Kyle Bittinger(6), Colin Brislawn(6)