Nicholas A. Bokulich

ETH Zurich — Switzerland

Biochemistry, Genetics and Molecular Biology · Life Sciences

47h-index49.7kcitations170works3.92yr avg
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Research Topics

Gut microbiota and health(64), Fermentation and Sensory Analysis(38), Genomics and Phylogenetic Studies(28), Horticultural and Viticultural Research(22), Probiotics and Fermented Foods(21)

Publications170 total

Interaction of Environment and Vineyard Management Effects Shape Microbial Functionality, <i>Terroir</i> , and Grape Qualities
Phytobiomes Journal·2026Open Access
HighALPS: ultra-high-throughput marker-gene amplicon library preparation and sequencing on the Illumina NextSeq and NovaSeq Platforms
mSystems·2026Open Access
Grape expectations: disentangling environmental drivers of microbiome establishment in winegrowing ecosystems
npj Biofilms and Microbiomes·2026Open Access
FAIRer DNA sequence data with q2-ena-uploader: a QIIME 2 plugin for data deposition in the European Nucleotide Archive
Microbiology Resource Announcements·2026Open Access
Shipped and shifted: modeling collection-induced bias in microbiome multi-omics using a tractable fermentation system
npj Biofilms and Microbiomes·2026· 1 citedOpen Access
FAIRer DNA sequence data with q2-ena-uploader: a QIIME 2 plugin for data deposition in the European Nucleotide Archive
Repository for Publications and Research Data (ETH Zurich)·2026Open Access
Target-driven optimization of feature representation and model selection for microbiome sequencing data with ritme
Repository for Publications and Research Data (ETH Zurich)·2025Open Access
Target-driven optimization of feature representation and model selection for microbiome sequencing data with <i>ritme</i>
2025Open Access
ViromeXplore: integrative workflows for complete and reproducible virome characterization
Briefings in Bioinformatics·2025· 1 citedOpen Access
Impacts of food additive sweeteners and emulsifiers on the gut microbiome: research trends and future directions
Trends in Food Science & Technology·2025Open Access
Revealing the temporal dynamics of antibiotic anomalies in the infant gut microbiome with neural jump ODEs
arXiv (Cornell University)·2025Open Access
Interaction of Environment and Vineyard Management Effects Shape Microbial Functionality, Terroir, and Grape Qualities
Repository for Publications and Research Data (ETH Zurich)·2025Open Access
Interaction of Environment and Vineyard Management Effects Shape Microbial Functionality, <i>Terroir</i> , and Grape Qualities
2025Open Access
Shipped and shifted: modeling collection-induced bias in microbiome multi-omics using a tractable fermentation system
2025Open Access
Indoor environmental conditions shape the microbial landscape of food production facilities across space and time
2025Open Access
Spatial heterogeneity and microbial terroir: balancing dispersal limitation and cultivar as drivers of microbial diversity in viticulture
2025Open Access
Indoor environmental conditions shape the microbial landscape of food production facilities across space and time
Repository for Publications and Research Data (ETH Zurich)·2025Open Access
Spatial heterogeneity and microbial terroir: balancing dispersal limitation and cultivar as drivers of microbial diversity in viticulture
Repository for Publications and Research Data (ETH Zurich)·2025Open Access
Tier-based standards for FAIR sequence data and metadata sharing in microbiome research
Nucleic Acids Research·2025· 2 citedOpen Access
The genetic basis of microbiome recruitment in grapevine and its association with fermentative and pathogenic taxa
New Phytologist·2025· 4 citedOpen Access
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Frequent Co-authors

David A. Mills(21), J. Gregory Caporaso(11), Matthew R. Dillon(10), Benjamin D. Kaehler(10), Evan Bolyen(9), Jai Ram Rideout(8), Gavin Huttley(8), Se Jin Song(8), Yoshiki Vázquez‐Baeza(8), Rob Knight(8), Lingjing Jiang(7), Tomasz Kościółek(7), Daniel McDonald(7), Michael S. Robeson(7), Christian C. Abnet(6), Colin Brislawn(6), Pieter C. Dorrestein(6), Mehrbod Estaki(6), Stefan Janssen(6), José A. Navas-Molina(6)