Mehrbod Estaki

Clinical Microbiomics (Denmark) — Denmark

Biochemistry, Genetics and Molecular Biology · Life Sciences

21h-index26.9kcitations56works4.32yr avg
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Research Topics

Gut microbiota and health(36), Metabolomics and Mass Spectrometry Studies(10), Diet and metabolism studies(10), Tryptophan and brain disorders(8), Probiotics and Fermented Foods(7)

Publications56 total

Bioengineered Escherichia coli Nissle 1917 Mitigates Intestinal Inflammation in a Porcine Model of DSS-induced Colitis
2026Open Access
SARS-CoV-2 infectivity can be modulated through bacterial grooming of the glycocalyx
mBio·2025· 1 citedOpen Access
Medication use is associated with distinct microbial features in anxiety and depression
Molecular Psychiatry·2025· 9 citedOpen Access
Author Correction: Whole-body metabolic modelling reveals microbiome and genomic interactions on reduced urine formate levels in Alzheimer’s disease
Scientific Reports·2024· 1 citedOpen Access
Bio-engineering a common probiotic to exploit colonic inflammation promotes reliable efficacy in translational models of colitis
2024· 2 citedOpen Access
Medication Use is Associated with Distinct Microbial Features in Anxiety and Depression
2024· 3 citedOpen Access
Whole-body metabolic modelling reveals microbiome and genomic interactions on reduced urine formate levels in Alzheimer’s disease
Scientific Reports·2024· 14 citedOpen Access
Whole-body modelling reveals microbiome and genomic interactions on reduced urine formate levels in Alzheimer’s disease
Research Square (Research Square)·2023· 2 citedOpen Access
A Mediterranean Diet Pattern Improves Intestinal Inflammation Concomitant with Reshaping of the Bacteriome in Ulcerative Colitis: A Randomised Controlled Trial
Journal of Crohn s and Colitis·2023· 89 citedOpen Access
BIRDMAn: A Bayesian differential abundance framework that enables robust inference of host-microbe associations
2023· 13 citedOpen Access
Association of Subjective and Objective Measures of Sleep With Gut Microbiota Composition and Diversity in Older Men: The Osteoporotic Fractures in Men Study
The Journals of Gerontology Series A·2023· 17 citedOpen Access
A Mediterranean-like fat blend protects against the development of severe colitis in the mucin-2 deficient murine model
Gut Microbes·2022· 21 citedOpen Access
Impact of Vaginal Estrogen on the Urobiome in Postmenopausal Women With Recurrent Urinary Tract Infection
Obstetrical & Gynecological Survey·2022· 2 cited
Swapping Metagenomics Preprocessing Pipeline Components Offers Speed and Sensitivity Increases
mSystems·2022· 24 citedOpen Access
Correction to: Compositional and genetic alterations in Graves’ disease gut microbiome reveal specific diagnostic biomarkers
The ISME Journal·2022Open Access
A Mediterranean-like fat blend protects against the development of severe colitis in the mucin-2 deficient murine model
2021Open Access
Candidate probiotic Lactiplantibacillus plantarum HNU082 rapidly and convergently evolves within human, mice, and zebrafish gut but differentially influences the resident microbiome
Microbiome·2021· 59 citedOpen Access
Automated, miniaturized, and scalable screening of healthcare workers, first responders, and students for SARS-CoV-2 in San Diego County
2021· 2 citedOpen Access
Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops
PLoS Computational Biology·2021· 6 citedOpen Access
Compositional and genetic alterations in Graves’ disease gut microbiome reveal specific diagnostic biomarkers
The ISME Journal·2021· 59 citedOpen Access
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Frequent Co-authors

Deanna L. Gibson(21), Rob Knight(21), Daniel McDonald(14), Yoshiki Vázquez‐Baeza(14), Clarisse Marotz(12), Austin D. Swafford(11), Cameron Martino(11), Qiyun Zhu(9), Sanjoy Ghosh(9), Pedro Belda‐Ferre(9), Tomasz Kościółek(8), Se Jin Song(8), Evan Bolyen(7), Matthew R. Dillon(7), Nicholas A. Bokulich(7), Pieter C. Dorrestein(7), Julia M. Gauglitz(7), Antonio González(7), Stefan Janssen(7), Lingjing Jiang(7)