Yoshiki Vázquez‐Baeza

University of California San Diego — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

54h-index60.2kcitations135works4.62yr avg
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Research Topics

Gut microbiota and health(98), Metabolomics and Mass Spectrometry Studies(31), Microbial Community Ecology and Physiology(17), Nutritional Studies and Diet(16), Genomics and Phylogenetic Studies(14)

Publications127 total

Scikit-bio: a fundamental Python library for biological omic data analysis
Nature Methods·2025· 2 cited
Author Correction: Gut microbiome composition in the Hispanic Community Health Study/Study of Latinos is shaped by geographic relocation, environmental factors, and obesity
UNC Libraries·2025Open Access
SARS-CoV-2 infectivity can be modulated through bacterial grooming of the glycocalyx
mBio·2025· 1 citedOpen Access
Correction for Zhu et al., “Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy”
mSystems·2024Open Access
Integration of polygenic and gut metagenomic risk prediction for common diseases
Nature Aging·2024· 20 citedOpen Access
Microbial co-occurrence complicates associations of gut microbiome with US immigration, dietary intake and obesity
UNC Libraries·2024Open Access
Gut microbiome composition in the Hispanic Community Health Study/Study of Latinos is shaped by geographic relocation, environmental factors, and obesity
UNC Libraries·2024Open Access
Author Correction: Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort
Nature Genetics·2024· 14 citedOpen Access
Integration of polygenic and gut metagenomic risk prediction for common diseases
2023· 2 citedOpen Access
Determination of Effect Sizes for Power Analysis for Microbiome Studies Using Large Microbiome Databases
Genes·2023· 18 citedOpen Access
Comprehensive evaluation of shotgun metagenomics, amplicon sequencing, and harmonization of these platforms for epidemiological studies
Cell Reports Methods·2023· 76 citedOpen Access
The gut microbiome is a significant risk factor for future chronic lung disease
Journal of Allergy and Clinical Immunology·2022· 53 citedOpen Access
Gut microbiome of multiple sclerosis patients and paired household healthy controls reveal associations with disease risk and course
Cell·2022· 279 citedOpen Access
Theoretical Rule-based Knowledge Graph Reasoning by Connectivity Dependency Discovery
2022 International Joint Conference on Neural Networks (IJCNN)·2022· 8 cited
Scalable power analysis and effect size exploration of microbiome community differences with Evident
2022· 8 citedOpen Access
Compositionally Aware Phylogenetic Beta-Diversity Measures Better Resolve Microbiomes Associated with Phenotype
mSystems·2022· 23 citedOpen Access
Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy
mSystems·2022· 115 citedOpen Access
Early prediction of incident liver disease using conventional risk factors and gut-microbiome-augmented gradient boosting
Cell Metabolism·2022· 83 citedOpen Access
The gut microbiome is a significant risk factor for future chronic lung disease
2022· 8 citedOpen Access
Bacterial metatranscriptomes in wastewater can differentiate virally infected human populations
2022Open Access
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Frequent Co-authors

Rob Knight(45), Daniel McDonald(21), Antonio González(17), Pieter C. Dorrestein(15), Lingjing Jiang(14), Se Jin Song(14), Austin D. Swafford(13), José A. Navas-Molina(12), Anupriya Tripathi(12), Tomasz Kościółek(10), Qiyun Zhu(10), Colin Brislawn(9), Catherine Lozupone(9), Clarisse Marotz(9), Gail Ackermann(9), Evan Bolyen(8), Nicholas A. Bokulich(8), Curtis Huttenhower(8), Stefan Janssen(8), Dan Knights(8)