Sushmita Roy

University of Wisconsin–Madison — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

49h-index10.6kcitations268works9.52yr avg
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Research Topics

Bioinformatics and Genomic Networks(40), Genomics and Chromatin Dynamics(38), Gene Regulatory Network Analysis(35), Gene expression and cancer classification(33), Single-cell and spatial transcriptomics(27)

Publications268 total

Defining the role of β-cell IRE1α/XBP1 pathway and its gene regulatory network components in non-obese diabetic mice
Nature Communications·2025· 1 citedOpen Access
Étude internationale en vie réelle sur les séquences d’immunothérapie combinée dans le mélanome métastatique
Annales de Dermatologie et de Vénéréologie - FMC·2025
Uncovering Functional Gene Regulatory Networks in Bulk and Single-Cell Data through Robust Transcription Factor Activity Estimation and Model-Guided Experimental Validation
2025· 1 citedOpen Access
Multi-species analysis of inflammatory response elements reveals ancient and lineage-specific contributions of transposable elements to NF-kB binding
Genome Research·2025· 2 citedOpen Access
Examining the dynamics of three-dimensional genome organization with multitask matrix factorization
Genome Research·2025· 1 citedOpen Access
Prevalence of Atherogenic Lipoprotein Phenotype among the Obese Medical Students in Bangladesh
International Journal of Pharmaceutical and Bio-Medical Science·2025Open Access
Author Correction: Rewiring of the 3D genome during acquisition of carboplatin resistance in a triple-negative breast cancer patient-derived xenograft
Scientific Reports·2024Open Access
Perspective on recent developments and challenges in regulatory and systems genomics
arXiv (Cornell University)·2024Open Access
Student’s Perspective Towards Online Teaching-Learning Activity
Journal of Enam Medical College·2024Open Access
A facile chemical strategy to synthesize precise AAV-protein conjugates for targeted gene delivery
2024· 2 citedOpen Access
Human iPSC-derived Committed Cardiac Progenitors Generate Cardiac Tissue Grafts in a Swine Ischemic Cardiomyopathy Model without Triggering Ventricular Arrhythmias
2024· 5 citedOpen Access
The single-cell transcriptome program of nodule development cellular lineages in Medicago truncatula
Cell Reports·2024· 31 citedOpen Access
Current and future directions in network biology
Bioinformatics Advances·2024· 81 citedOpen Access
Human left ventricular cardiac fibroblasts undergo a dynamic shift in secretome and gene expression toward a cardiac myofibroblast phenotype during early passage in typical culture expansion conditions
Cytotherapy·2023· 1 citedOpen Access
Current and future directions in network biology
arXiv (Cornell University)·2023· 2 citedOpen Access
Predicting patient-specific enhancer-promoter interactions
Cell Reports Methods·2023Open Access
Examining dynamics of three-dimensional genome organization with multi-task matrix factorization
2023· 1 citedOpen Access
Benchmarking graph representation learning algorithms for detecting modules in molecular networks
F1000Research·2023· 1 citedOpen Access
Leveraging epigenomes and three-dimensional genome organization for interpreting regulatory variation
PLoS Computational Biology·2023· 3 citedOpen Access
The Single-Cell Transcriptome Program of Nodule Development Cellular Lineages in <i>Medicago truncatula</i>
2023· 2 citedOpen Access
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Frequent Co-authors

Alireza Fotuhi Siahpirani(11), Manolis Kellis(7), Margaret Werner‐Washburne(6), Deborah Chasman(6), Dawn Thompson(5), Aviv Regev(5), Chris Allen(4), Sara Knaack(4), Pouya Kheradpour(3), Michael F. Lin(3), Ferhat Ay(3), Joseph W. Carlson(3), Daniel Marbach(3), Christopher H. Becker(3), Joshua J. Coon(3), Ilan Wapinski(3), Courtney E. French(3), Jenna Pfiffner(3), Peter C. Harris(3), Rupa Sridharan(3)