Douglas L. Brutlag

Stanford University — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

50h-index11.7kcitations112works0.02yr avg
OpenAlex↗Google Scholar↗Lab page↗

Accepting Students?

No reports yet. Know if this professor is taking students?

Research Topics

Protein Structure and Dynamics(29), Genomics and Phylogenetic Studies(26), DNA and Nucleic Acid Chemistry(25), RNA and protein synthesis mechanisms(24), Machine Learning in Bioinformatics(21)

Publications112 total

Sequence Motifs: Highly Predictive Features of Protein Function
Studies in fuzziness and soft computing·2008· 53 cited
Using Stochastic Roadmap Simulation to Predict Experimental Quantities in Protein Folding Kinetics: Folding Rates and Phi-Values
Journal of Computational Biology·2007· 26 cited
Inferring Protein Function from Sequence
2007· 3 cited
Dynamic use of multiple parameter sets in sequence alignment
Nucleic Acids Research·2006· 29 citedOpen Access
Genotypic predictors of human immunodeficiency virus type 1 drug resistance
Proceedings of the National Academy of Sciences·2006· 256 citedOpen Access
A graph-based motif detection algorithm models complex nucleotide dependencies in transcription factor binding sites
Nucleic Acids Research·2006· 24 citedOpen Access
MotifCut: regulatory motifs finding with maximum density subgraphs
Bioinformatics·2006· 168 citedOpen Access
Development and validation of a consistency based multiple structure alignment algorithm
Bioinformatics·2006· 25 citedOpen Access
A genome-wide analysis of CpG dinucleotides in the human genome distinguishes two distinct classes of promoters
Proceedings of the National Academy of Sciences·2006· 1.4k citedOpen Access
Nucleotide Channel of RNA-dependent RNA Polymerase used for Intermolecular Uridylylation of Protein Primer
Journal of Molecular Biology·2006· 30 cited
Predicting Experimental Quantities in Protein Folding Kinetics Using Stochastic Roadmap Simulation
Lecture notes in computer science·2006· 11 cited
On suboptimal alignments of biological sequences
Lecture notes in computer science·2005· 27 cited
Homology Modeling of a Human Glycine Alpha 1 Receptor Reveals a Plausible Anesthetic Binding Site.
ChemInform·2005
Homology Modeling of a Human Glycine Alpha 1 Receptor Reveals a Plausible Anesthetic Binding Site
Journal of Chemical Information and Modeling·2004· 34 cited
Identifying Protein-Protein Interaction Sites on a Genome-Wide Scale
Neural Information Processing Systems·2004· 25 cited
Computational functional genomics
IEEE Signal Processing Magazine·2004· 9 cited
FoldMiner and LOCK 2: protein structure comparison and motif discovery on the web
Nucleic Acids Research·2004· 51 citedOpen Access
A suite of web-based programs to search for transcriptional regulatory motifs
Nucleic Acids Research·2004· 38 citedOpen Access
Automatic construction of 3D structural motifs for protein function prediction
2004
Stochastic Conformational Roadmaps for Computing Ensemble Properties of Molecular Motion
Springer tracts in advanced robotics·2004· 16 cited
page 1 of 6Next →

Frequent Co-authors

Arthur Kornberg(7), Timothy Nelson(4), Jun S. Liu(3), Randy Schekman(3), Earl R. Shelton(3), Asa Ben‐Hur(3), William Wickner(2), Neil Osheroff(2), Tao‐shih Hsieh(2), Peter Setlow(2), James Bonner(2), Craig G. Nevill-Manning(2), Thomas D. Wu(2), Ole Westergaard(2), W. James Peacock(2), Claiborne V.C. Glover(2), Mehmet Serkan Apaydın(2), Carlos Guestrin(2), David Hsu(2), Jean‐Claude Latombe(2)