Luke Thompson

National Oceanic and Atmospheric Administration — United States

Environmental Science · Physical Sciences

36h-index38.8kcitations170works1.12yr avg
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Research Topics

Microbial Community Ecology and Physiology(64), Genomics and Phylogenetic Studies(35), Environmental DNA in Biodiversity Studies(29), Protist diversity and phylogeny(20), Gut microbiota and health(16)

Publications169 total

A TDWG and GSC Collaborative Initiative To Develop an Environmental DNA (eDNA) Metadata Checklist
Biodiversity Information Science and Standards·2026Open Access
Microbial community dynamics over large spatial and environmental gradients in a subtropical ocean basin
Applied and Environmental Microbiology·2026Open Access
Expanding the Chaos: Neural Operator for Stochastic (Partial) Differential Equations
ArXiv.org·2026Open Access
Expanding the Chaos: Neural Operator for Stochastic (Partial) Differential Equations
arXiv (Cornell University)·2026Open Access
Evaluating Prey Availability for the Rice's Whale ( <i>Balaenoptera ricei</i> ) Based on Environmental <scp>DNA</scp>
Ecology and Evolution·2026Open Access
STREAMS guidelines: standards for technical reporting in environmental and host-associated microbiome studies
Nature Microbiology·2025· 2 cited
Guidance and best practices for species identification using eDNA metabarcoding - When do you call a cod a cod?
2025Open Access
The southern gap in ocean microbiome science
Ocean Microbiology·2025· 3 citedOpen Access
ATOM: A Pretrained Neural Operator for Multitask Molecular Dynamics
arXiv (Cornell University)·2025Open Access
Evaluating prey availability of Rice’s whales (Balaenoptera ricei) based on environmental DNA
2025Open Access
Expanding the scale and scope of the Marine Biodiversity Observation Network Pole to Pole of the Americas: Merging rocky intertidal biodiversity surveys with environmental DNA and plankton imaging applications
Research Ideas and Outcomes·2025Open Access
AmesFormer: State-of-the-Art Mutagenicity Prediction with Graph Transformers
Chemical Research in Toxicology·2025· 1 cited
A Metadata Checklist and Data Formatting Guidelines to Make <scp>eDNA FAIR</scp> (Findable, Accessible, Interoperable, and Reusable)
Environmental DNA·2025· 14 citedOpen Access
Microbiome data management in action workshop: Atlanta, GA, USA, June 12–13, 2024
Environmental Microbiome·2025· 4 citedOpen Access
A Prosperous Economy Requires Ocean Biodiversity Information, Technology, and Innovation
Marine Technology Society Journal·2025
Referee report. For: Facilitating bootstrapped and rarefaction-based microbiome diversity analysis with q2-boots [version 1; peer review: 1 approved, 2 approved with reservations]
Faculty of 1000 Research Ltd·2025Open Access
Amesformer: State-of-the-Art Mutagenicity Prediction with Graph Transformers
2024Open Access
Amesformer: a graph transformer neural network for mutagenicity prediction
2024Open Access
Assessing the effects of warming and carbonate chemistry parameters on marine microbes in the Gulf of Mexico through basin-scale DNA metabarcoding
2024Open Access
Characterisation of the octogenarians presenting to the diagnostic heart failure clinic: SHEAF registry
Open Heart·2024Open Access
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Frequent Co-authors

Rob Knight(19), Se Jin Song(11), Anupriya Tripathi(11), Pieter C. Dorrestein(10), Jessica L. Metcalf(10), Lingjing Jiang(9), Tomasz Kościółek(9), Clarisse Marotz(9), Daniel McDonald(9), José A. Navas-Molina(9), Austin D. Swafford(9), Curtis Huttenhower(8), Stefan Janssen(8), Alexey V. Melnik(8), Yoshiki Vázquez‐Baeza(8), Ulrich Stingl(8), Scott T. Kelley(7), Dan Knights(7), Catherine Lozupone(7), Louis‐Félix Nothias(7)