Fredrik Ronquist

Swedish Museum of Natural History — Sweden

Agricultural and Biological Sciences · Life Sciences

62h-index104.0kcitations229works4.72yr avg
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Research Topics

Plant and animal studies(45), Genomics and Phylogenetic Studies(42), Species Distribution and Climate Change(37), Genetic diversity and population structure(36), Hymenoptera taxonomy and phylogeny(36)

Publications229 total

The ASV Portal Allows for Efficient Handling of DNA Derived Data in the Living Atlas
Biodiversity Information Science and Standards·2023Open Access
Skyline fossilized birth-death model is robust to violations of sampling assumptions in total-evidence dating
2023Open Access
FAVIS: Fast and versatile protocol for non-destructive metabarcoding of bulk insect samples
PLoS ONE·2023· 23 citedOpen Access
Data from: Skyline fossilized birth-death model is robust to violations of sampling assumptions in total-evidence dating
Zenodo (CERN European Organization for Nuclear Research)·2023Open Access
Optimizing insect metabarcoding using replicated mock communities
Methods in Ecology and Evolution·2023· 31 citedOpen Access
Automatic Alignment in Higher-Order Probabilistic Programming Languages
arXiv (Cornell University)·2023Open Access
Author response for "Optimizing insect metabarcoding using replicated mock communities"
2023
ASV portal: an interface to DNA-based biodiversity data in the Living Atlas
BMC Bioinformatics·2023· 6 citedOpen Access
Automatic Alignment in Higher-Order Probabilistic Programming Languages
Lecture notes in computer science·2023· 7 citedOpen Access
Author response for "Optimizing insect metabarcoding using replicated mock communities"
2022
Author response for "Optimizing insect metabarcoding using replicated mock communities"
2022
Phylogenomic Analysis of Protein-Coding Genes Resolves Complex Gall Wasp Relationships
2022Open Access
Optimizing insect metabarcoding using replicated mock communities
2022· 7 citedOpen Access
Evaluation of non-destructive DNA extraction protocols for insect metabarcoding: gentler and shorter is better
Metabarcoding and Metagenomics·2022· 26 citedOpen Access
Evaluation of non-destructive DNA extraction protocols for insect metabarcoding: gentler and shorter is better
Zenodo (CERN European Organization for Nuclear Research)·2022Open Access
Towards Large-Scale Integrative Taxonomy (LIT): Resolving the Data Conundrum for Dark Taxa
Systematic Biology·2022· 121 citedOpen Access
Compiling Universal Probabilistic Programming Languages with Efficient Parallel Sequential Monte Carlo Inference
Lecture notes in computer science·2022· 13 citedOpen Access
Universal Probabilistic Programming Language Compilation with Parallel Efficient Sequential Monte Carlo Inference.
arXiv (Cornell University)·2021Open Access
Phylogenetic reconstruction of ancestral ecological networks through time for pierid butterflies and their host plants
Ecology Letters·2021· 36 citedOpen Access
A hymenopterists’ guide to the Hymenoptera Anatomy Ontology: utility, clarification, and future directions
UNC Libraries·2021Open Access
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Frequent Co-authors

John P. Huelsenbeck(13), Isabel Sanmartín(5), Johan Liljeblad(5), Paul van der Mark(4), Sebastian Höhna(3), Bret Larget(3), Johan A. A. Nylander(3), J. L. Nieves‐Aldrey(3), Seraina Klopfstein(3), Lars Vilhelmsen(3), Susanne Schulmeister(3), John M. Heraty(3), Daniel L. Ayres(2), Aaron E. Darling(2), Marc A. Suchard(2), Alexandr P. Rasnitsyn(2), Tracy A. Heath(2), Nicolas Lartillot(2), Tanja Stadler(2), James M. Carpenter(2)