Trygve E. Bakken

Allen Institute for Brain Science — United States

Biochemistry, Genetics and Molecular Biology · Life Sciences

45h-index16.6kcitations135works14.52yr avg
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Research Topics

Single-cell and spatial transcriptomics(70), Neuroinflammation and Neurodegeneration Mechanisms(48), Neural dynamics and brain function(21), Neuroscience and Neuropharmacology Research(16), Cell Image Analysis Techniques(16)

Publications133 total

Cross-species consensus atlas of the primate basal ganglia
2025· 5 citedOpen Access
A cross-species spatial transcriptomic atlas of the human and non-human primate basal ganglia
2025· 7 citedOpen Access
ANTIPODE Provides a Global View of Cell Type Homology and Transcriptomic Divergence in the Developing Mammalian Brain
2025· 3 citedOpen Access
Enhancer-AAVs allow genetic access to oligodendrocytes and diverse populations of astrocytes across species
2025· 1 citedOpen Access
Enhancer-AAVs allow genetic access to oligodendrocytes and diverse populations of astrocytes across species
2025Open Access
HCN channels reveal conserved and divergent physiology in supragranular pyramidal neurons in primate species
2025· 1 citedOpen Access
A complete and near-perfect rhesus macaque reference genome: lessons from subtelomeric repeats and sequencing bias
2025· 1 citedOpen Access
Mouse lemur cell atlas informs primate genes, physiology and disease
Nature·2025· 4 citedOpen Access
A molecular cell atlas of mouse lemur, an emerging model primate
Nature·2025· 7 citedOpen Access
Evaluating methods for the prediction of cell-type-specific enhancers in the mammalian cortex
Cell Genomics·2025· 12 citedOpen Access
Enhancer AAVs for targeting spinal motor neurons and descending motor pathways in rodents and macaque
Cell Reports·2025· 16 citedOpen Access
A suite of enhancer AAVs and transgenic mouse lines for genetic access to cortical cell types
Cell·2025· 33 citedOpen Access
Cytosplore EvoViewer: Visual Analytics of Conserved Evolutionary Patterns in multi-species single-cell sequencing data
2025
Integrating multimodal data to understand cortical circuit architecture and function
Nature Neuroscience·2025· 11 cited
Applying single-cell and single-nucleus genomics to studies of cellular heterogeneity and cell fate transitions in the nervous system
Nature Neuroscience·2024· 12 citedOpen Access
Distinctive physiology of molecularly identified medium spiny neurons in the macaque putamen
Cell Reports·2024· 1 citedOpen Access
Evaluating Methods for the Prediction of Cell Type-Specific Enhancers in the Mammalian Cortex
2024· 3 citedOpen Access
Enhancer AAVs for targeting spinal motor neurons and descending motor pathways in rodents and macaque
2024· 5 citedOpen Access
A suite of enhancer AAVs and transgenic mouse lines for genetic access to cortical cell types
2024· 21 citedOpen Access
Single-cell genomics and regulatory networks for 388 human brains
Science·2024· 105 citedOpen Access
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Frequent Co-authors

Ed S. Lein(38), Rebecca D. Hodge(29), Jeremy A. Miller(26), Nick Dee(19), Kimberly A. Smith(18), Tamara Casper(18), Darren Bertagnolli(17), Jeff Goldy(17), Song‐Lin Ding(15), C. Dirk Keene(14), Bosiljka Tasic(12), Zizhen Yao(12), Christine Rimorin(12), Michael Tieu(12), Boaz P. Levi(12), Hongkui Zeng(12), Lucas T. Graybuck(11), Susan M. Sunkin(11), Amy Bernard(11), Michael Hawrylycz(11)